Scaffold Ga0104986_1961

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1961
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 62016
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000346	Metagenome / Metatranscriptome	1253	Y
F033797	Metagenome	176	Y
F057944	Metagenome	135	N
F085600	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_196159	F000346	AGGAG	MDKADLKQDKKMIAGAVHKHEKKMHPGKPMTKLAKGGKTNEMMKQYGRGMAKVVNQRGASRGG*
Ga0104986_19616	F033797	N/A	MRDDLALEGLAVPASRTFTDYDTMVDVVYITAEELDGATYGDDPAHPDDHPFCYVELKDGRSLYFVSVDLDFGELA*
Ga0104986_196169	F085600	AGGAG	MQTDVKGADCPASTATTVYNGRTRFKGIWYSASAATTIAIKDGATTLFTFTIAAASTSSIWIPAEGILCSTSLIVTPGASVTAVAFYG*
Ga0104986_19619	F057944	GGAGG	MMQTQVAESHPTTRVFPRTLQEAYPKHYVNEGVFEGPYRDPHLSDFAILCALIAIVGFFFYMFTKYIWG*