Scaffold Ga0104986_1951

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1951
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 59849
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (77.66%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012327	Metagenome / Metatranscriptome	281	Y
F025685	Metagenome	200	Y
F036230	Metagenome / Metatranscriptome	170	Y
F057986	Metagenome	135	Y
F062555	Metagenome	130	Y
F064498	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_195132	F025685	AGGAG	MRYILDIFALIGLVSTIIVAGFYAGYVTYHPKCHTLPAVFTKECK*
Ga0104986_195134	F057986	N/A	MINTIKRLITTPTALEMAAKELVEAQRAKLKAESAMEYALSVVDYNDARIKRLRMRMNELQGEQA*
Ga0104986_195142	F036230	AGGAG	MIEVGDIVQVEPSQKLFGGCMVVVTELKDWGIQGYVQSAGVEGQQYIRLKTEQYEQTGGKAVWVIK*
Ga0104986_195146	F062555	AGGAG	MDKTYEAIIDYAKPCMDAEKALKDAHNAVLEQNLDLAMIRTMDAVISARLMYGSLRDMKERQGGR*
Ga0104986_195152	F064498	AGGA	MRQRWLYKVYFAGRFVRAFTSRTAARHFMEEMTDLDLPFLILPHESGQIPYMIGEKK*
Ga0104986_195170	F012327	GGA	MIDKYLQHLSSRIDDKVSQLQIALADGNAKDYAEYTKMCGEVKGLLTARLFITDLHERLKTDDDNE*