Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1942 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1942 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	53221
Total Scaffold Genes	70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	55 (78.57%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

53221

Total Scaffold Genes

70 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

55 (78.57%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002099	Metagenome / Metatranscriptome	593	Y
F002933	Metagenome / Metatranscriptome	519	Y
F004432	Metagenome / Metatranscriptome	438	Y
F072099	Metagenome	121	Y
F090296	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_194229	F072099	AGGA	MRYRNEPIVVQLVKLYMPLVELGGKRLDTLREDFYDNAVNLTCNARRFIPVFSPYDIALSGGEPYSVWS*
Ga0104986_194237	F090296	AGGAG	MASRRNPSRNADLAGAPPKLATMDDLAFPTAAKTGRAHPVSKSASTSRAPHRINLRAVAEACIEEGLDPAVEIAKALKATIPMMRGGHQVLDNEGKAVMVPLLDVDTRMRTLNEFLQYTQPKLKSIEVKMSGTLDLTSEQLDNRLNMLLAKAAR*
Ga0104986_194258	F002099	N/A	VKWLAALVLTLALHSTSKDLCSVREFYGIAYTIHNPTERHQQMSMWLTNHLHLCKSTDFVVIWNNLSEWAGAADSAELRHKVIQGYKNAIEREKKK*
Ga0104986_194259	F002933	N/A	MVAAADYPTKADALERRAARLDEEYKQALKMKKEINKIQDLEFELYVKKAEQNQLSLEIFTNRKLDLYA*
Ga0104986_194260	F004432	GGA	MVTKKPPAKVAPVKRRTPKPKAEQTINVSVAAPAPVKAEAKKDDSALGKVIGLIEWVDNPFKLFTVILLSFLAFAGYFAWDSRQVILHAITNQDKMPQLAKQESLLAPARGLLKDVDGLVVLIHKANLATNSRTTVLALNADGSREKAMEGTVTSLFNASADRNAAMVAMLNNEILCEEFNPSSKVGEWGAKQGVKFMCRGSIPPDLGKFAGYIAIGFKEKPEDIAALKTRINLAATDLSEE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1942

Overview

Ecosystem & Geography

Associated Families

Sequences