Scaffold Ga0104986_1937

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1937
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 51071
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (74.24%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001396	Metagenome / Metatranscriptome	705	Y
F004761	Metagenome / Metatranscriptome	424	Y
F013753	Metagenome / Metatranscriptome	268	Y
F048959	Metagenome / Metatranscriptome	147	N
F058086	Metagenome	135	N
F069861	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_193717	F001396	N/A	MGPVVVVLQRLRKENTDQHNEGRILLRLIGNKVDKVASKIDGHIGWHDGVKDSVGKED*
Ga0104986_193729	F013753	N/A	MMKQNEEMTLTAAQEKYLDWLCTAPSERVPASKNKYALENTVDISTMRRWEKKDIFRSRWKTQVDDIQGSPERTQKLLDNLYNKALEGDTKSAELYLKATNRMAPPSVTISSNKKTVDLTDAELDSLIATIAEREKANRNHLKAVV*
Ga0104986_193746	F048959	GGGGG	LRKNEPTLDVTITLTELRAVVKSLSIGTDQLAKKINRLGDDKRADDVYAEFADLMSAKKEMEEVLLAALQGESLDNQNNYGHGHTARE*
Ga0104986_193754	F058086	GGA	MKDNRWDIPATQQYNFKNDLQFGKKGEQITKDFLEAISKGSFEVKTDRYRNGRMVVETQQNPRDTGWKPSGVDVTLADWWVYVYALDGSLMVIKVERLKRYIQTLSGKRLKTFAPMSNNPTKGFLLLPEEVMNMMTNPIYDMPGAEQ*
Ga0104986_193757	F069861	AGGAG	MKRQYTGNKDGAAKGLRPGMKVFIEEVIKLGNGAFWNNGDFGVRMMRGSETSMSVHATGRAVDFSYRNMGKGKGVPNGRREAVRMCKLLVENADLLGLEALFDYFPAPWGRAWMCDRDAWSNYKKETIHGAPKGDWLHAEISPEMADSPAKVREAFAKLVLPVAEELKPASE*
Ga0104986_193765	F004761	AGG	MAITLTTLRSQVRDMADLDENDLSNAVIDQFAREGFQRIYALERRWPILQETYTFNTVANQRQYTISTIGDIREIISVVDTSTQGARLTLIDYNDAESIWLGNLDVASRPYFYSFWDKQIWLWAKPDIVYPMTVRAFRNPVYTWLSDITENIDLDEWFHAILPYFVLARVYQRQEDSELANMYMKSFEEGVAFARRDLMKASSAQPVVMSGGRQYPTMKRWLQTLGRTL*
Ga0104986_19378	F004761	AGG	MSDLDETDLSDAVIDQFAREGFQRIYALERRWPILQETYTFSTVANQREYTISTIGDIREIISIVDTSAQGARLHLIDYNQAEMVWLGNLDVAARPYFYSFWDKKIQLWAKPNIVYPMTVRAFRNPVYTWLTDITEDIDLDEWFHAILPYFVLARVYQRQEDSDLSNMYMKSFEEGVAFARRDLMKASSAQPVVMSGGRQYPTLQRWLQTLGRTLKNY*