Scaffold Ga0104986_1931

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1931
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 49816
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (85.33%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F007581	Metagenome	348	Y
F010016	Metagenome	309	Y
F012016	Metagenome	284	Y
F014840	Metagenome	259	Y
F046241	Metagenome	151	Y
F046899	Metagenome	150	Y
F050979	Metagenome	144	Y
F074556	Metagenome	119	Y
F100665	Metagenome	102	Y
F100701	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_193113	F046241	N/A	MKQVQIVAPEYIHTIWDDVEPMLKPAFINFDNADYGIEHIKVLIIEQLQYLFVVVEDKKIIGAFTVEVINYPNHRVAHTTSMGGKGLFNIDTVKQYEDWARLQGVTKIRAYAKDSQARLFKMKLGLNAVTHVVEKTL*
Ga0104986_193128	F050979	AGG	MAQPQIHKSRRHADPFKTKTGKDRLKALPIKKLYELLDKAEVGKKRAKIAKEIARRTPI*
Ga0104986_193129	F010016	AGGA	MSDKTARNDVTGDFIRSKPSSDMFGDNFDKIFRNKKKSDDVSPHLHEYQLNKSTGEVEKVEDGTTTNT*
Ga0104986_193132	F046899	N/A	LKNTQNNKKQRRNIVQNAKLNNFDPNARLAIKEFEAWQMKVFAKNAKKGWRFFQPDAFDKPTPRSAREAWGAPYKPDLTDKKEKRNEKIMFAIVVAILLLLSTL*
Ga0104986_193135	F014840	GAGG	VEGSKMIPFSYAVVDDEGEVIRKHRWSVKEAKWFTETNPHVKVVKLEVPKEPNHTEVFTSAFNLVGECLF*
Ga0104986_193137	F100665	AGGAG	MAKPYIKVVSIKDTKQGDCKLTLDMNQAGREVILQAGIQKALADYTVANSKKLSFWNKLQICWSILK*
Ga0104986_193138	F006587	GGAGG	MMEDNKYQGTGFTVVGFIIGCCLTWAVMQYAHTQKKYSMNLKCIQGELYEEIRPNMYAKSHLECFEQRTLTP*
Ga0104986_193139	F012016	AGGAG	MKDPYAWAIEEFNSHGDLVWSSIMQTRPKELSWIKDLPTKKHNIVITPLYKDEANAEKITGIKSYKESTKRLIEANGGL*
Ga0104986_193165	F100701	GGAG	MKTLNLKQIGYQQATNKDNERSLARQVYEQYPNFDEEVADEPKAELFAGYQLRVAENQPKIDQHFIVESGNYLPVEKLAFDNHKGEKYHRTVANIMAYTPQAFGALRTSNPQLHALIKAERDQVSKYCSNRLNDLKKAIKALKNEGKPRERGATRTFAETVKETLDGLKKKCVNAKARGDDSANEKKLITAISEFNRKWVS*
Ga0104986_19317	F007581	AGGAG	MNMEKITSMLFPVIVSAIAWMISSVTSMQNDLIDIKAKMPILITEQGVPTDSPISAENRAKLKEELRAQISELNVRIRILEEHDMQRKGK*
Ga0104986_193170	F074556	AGG	MQTQNTEENQQLDQNPVVMYPNIDENIPIPKSAREALPDLSNEEEVEMLANTIKLISDLTGQPIQATQDDVMEAKTIAETIIKNPENKIQLKKYKSPVLASLAGMVAELNSDKLVDDLKELKTFVVNGLIKEATTADKPKERITALRAIGEVDGVDAFKKHTEVVHKNMSMDDIESRLQTLVTKLQKRLDVKDSEVIDAEVVKDE*