Scaffold Ga0104986_1930

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1930
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 49727
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (22.95%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017470	Metagenome	240	Y
F027440	Metagenome / Metatranscriptome	194	N
F037195	Metagenome	168	N
F043895	Metagenome	155	Y
F044452	Metagenome	154	N
F052556	Metagenome / Metatranscriptome	142	N
F059910	Metagenome / Metatranscriptome	133	N
F063632	Metagenome	129	N
F065720	Metagenome / Metatranscriptome	127	Y
F067673	Metagenome	125	N
F093769	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_193011	F093769	N/A	MSNQSLNELDLLLGLPKPVEDMTDKELEKFLLKHFPHTRPTGTDLASLLNDPLLKGIDVQAIINQTQNFKLKK*
Ga0104986_193015	F059910	N/A	MKKGTEVKIGFIPANVYKVLVHKTETRQSAKGFKMVVCECEIIAPETAAAAGVTYKTLGSKGNMYIMLENKNGVDSALELLASSLQTIGLYDGLPDDYTDVDVAEALASLQGQAFNMLVQSQPEYVTDDPSNSRDLKFAKRDENGEAIVKRYNTQFDFSQVKGAASPLANNF*
Ga0104986_193028	F067673	N/A	MNSLIQQVSETIGVLPDSRDKEAQVLAWLNRAAVMIYDQYDLPGSVFEQFFCVDNNQHVITFPWYVGSIRGVRWHDSSRLVTTRDMRPRYHAVPWTQPYLQWRQIAPTPLHTPLVNSGLLTFQLTLPEAEPFDIIINGQTPQAANVTEIISFTPGDLIKTSVNMFEPESPFGVKSLKKTIFTKSDVVVRQGTTQAEIGRIPNNQLYASNIRLQILDWNASTPFILGEDCVEVLYKQRFSPFVNIDSIWTDERLVQGLVYGVKYIFAMEKEKMDVASVNKDMMEQICRGVCENMESGQELMVQTERHASQDAAIMFPVWPLVQGGVRNLW*
Ga0104986_193033	F065720	AGAAG	VSFLSDLIMKLLRWFYELSQKDSISQDAQKDEKLRQDLRARIDAHERELLIESDLRSKRAAGEIGRAGKSPSVGFRFKRPEGKIKE*
Ga0104986_193035	F063632	N/A	MKSVIEFLGNFFQNNGHLRGALYFSIAALTPMSAAFVEWASQDGPKNWYEVIALFLGSIISGLTAIRAYLDTHLSKVKNTNEKQ*
Ga0104986_193036	F052556	N/A	MIKLELTPEEANGVLQLIDIAIKAGGIANAKVGLPIFEKIMAAANASGIAQPAAASEER*
Ga0104986_193045	F017470	N/A	MHANRFYQFFNPKMCIVFLVLSMLWSLYMSDLMMRNQILGLRRAGMSVEEVSAALEIDTAVVRLALESVGGSSVLRKEALKEEDITDDVSEAEAKEMMGIIKDIARNEESGVYARLNAAKYAHGAKRGYHKRHLDLNVGSGELLLKINEAYASAAMRARAALGGQSLTAKEIVVSEAPIEQAPTQSPTDHESPTQSQPAAPKPRPFKL*
Ga0104986_193050	F044452	N/A	MTNRCLRCLQIIDTERKALGFDRCIKCAPQWTYKGALNFGHKTGGSVQPMHPDAFKVHKRVTHRSAKGTNGKSFQTGTCVINIKDA*
Ga0104986_193052	F027440	N/A	MSTKNLELVASFAGSVFQSDSDGNPLFVTSERHVRKTAKSAERTVSFQKPVLAVSDLQYYIKRGEALAEIATEHVTKVKNEDGSVTETKRVSNALSDLVAEHLLDISEDASEAYLSKGNTPDYFAAFIYGVSADRETEKSVLKKIESIRSEIGSIVFALAGEWTEDTARSLGVSDKDAAIAKQSNLIASLAQLLAKANELSAAKAKREAKKAKV*
Ga0104986_19306	F037195	N/A	MNIFNPTNPQPPQDPTELLKQAENLLNKTERKQGWPYYDIKHALQFAQMVIKLSKIPSKKATINTLTLRQQPQTVRARLSQGKAFIVDKGIEVLKGQIDPDDMPLVSELAEKVQISVRKVNLIIELVEPVDNILDAMTPLLGGTDEDPTTFNEDVFREEIVEFMNSGEVGSQASWQNYTSSAEKFARQLAMQDNTIIIETTPTELIVMKMSEEMLKGLE*
Ga0104986_19309	F043895	N/A	MNATLLMLSFLTAETTLIALQQDFNAKLRALSTIESNDNDKAKGKHGELSRYQLKRSVWKQHFPSEKDQRHIPAEARRCAKAHLCWLELRLCLAQRKREPDPRDVYAAWNLGLAAFSRRDYDFNRLSKSAKAKCERFYNLYSDYRNSQ*