Scaffold Ga0104986_1928

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1928
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 49460
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (84.72%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003640	Metagenome / Metatranscriptome	475	Y
F004305	Metagenome / Metatranscriptome	444	Y
F024254	Metagenome	206	Y
F027177	Metagenome	195	Y
F039599	Metagenome / Metatranscriptome	163	Y
F046202	Metagenome	151	Y
F077007	Metagenome / Metatranscriptome	117	N
F078231	Metagenome	116	Y
F080035	Metagenome	115	Y
F093271	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_19282	F027177	GAGG	MKFLEWIRQLYTPATCEELMVRELDTARRDLLLAETAKDYSESMVLYNNQRIERLTTALKECL*
Ga0104986_192835	F003640	GGA	MTVALVYDPRYHTWDSWSSLMCEAYAAQQLSANTQEENWKDWAAGLKAIDIFTNEGIPGPYIYDSWQEWASALVGAINQTTQEAGI*
Ga0104986_192836	F024254	AGAAG	MNFIEIFNYVAKVARPAHVKVIVATSMEDKFGDLGLDSLDGILLMMFITEIYGISEKESKDWSPTSIQELHDLVMAIKTKEPASMEEVADVCR*
Ga0104986_192845	F039599	AGGA	MLSEETIKQIFFQSDRPRKDPLIADEVDIVQFAHNIEQFVAVEYALKEHTRCVKIVKDMNRDVGEALDNQRPVKT*
Ga0104986_192847	F077007	N/A	MRLMRNQSAAHIDFFQFKGLIETNPKATPCDIDMVFERKCKFFVGEWKRKGESISQGQGLLLRNLARQPQFTVVIIQGNTDGETVVERFEQLCSDGVFRVRGRSFDELKKFVTRWYNWADAQN*
Ga0104986_192854	F093271	GGAG	MRVRGRMSIVTVVSFVTSSKCASSIAIAHTVGSVVTLTTLGSVTQDGMRIIPSPDLMLMLETSGRKATEVKQGNGND*
Ga0104986_192856	F078231	GAGG	MNEPELLDIFAMFALTALMQKTSKVAKSKIDIGYEAYEQAQAMMDVRKDFIKKLEK*
Ga0104986_192857	F046202	GGAG	MFNTFGEFFWAFMSLSGIMFWFCVTVFIALIIKRTRSKRRSYYG*
Ga0104986_192870	F080035	AGGAG	MKIELTPAVIACLKRGLNCWPEQNNAEGAEIREILRQAEEVKLRIGEDV*
Ga0104986_19289	F004305	AGGAG	MATEDKEQQSEQVRQHTRMAAGAWVTGETLKEQSKATIPEANSDHGNFSQPKGIEKSNA*