Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1922 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1922 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	48167
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (73.77%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

48167

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (73.77%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001739	Metagenome	643	Y
F004450	Metagenome	437	Y
F011669	Metagenome	288	Y
F014846	Metagenome / Metatranscriptome	259	Y
F018002	Metagenome / Metatranscriptome	237	N
F041763	Metagenome	159	Y
F072119	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_19221	F041763	GAGG	VVISKKIRDALAQAPDGMTALELALALNIGASQISRSLALMPDTYIDRWVQSRTK
Ga0104986_192224	F072119	AGGA	MKFKLDVARDVDTDEPGVFIMNLPGGWKFNHDLFSLSHTHAYDSMKELRADLKQSVEPCDCAECRRMIAKK*
Ga0104986_192243	F014846	N/A	MMYLDVSGQATYGIAICGRCSRKFLLAELSPDPNSPGLMVCKEDLDDYDPYRLAPRAPDQIVLPFTRPDTSINTHPAGLIQEAGDLFIVTEDGDEYLEI*
Ga0104986_192246	F001739	AGG	MTTFTTRITSMYTLQQPDPNYVVNAIWEVTGVDGANTASIGGNTQFSSADQETAFVPYDQLTEATVIGWIPESAITSAQQCVQGQIDSMITPPVSPANTALPWSQA*
Ga0104986_192248	F018002	N/A	MSLETQFSSHEAVCAERYAQINARLKRLEGVIMKTAGVLIVSMSAIVYASLTFR*
Ga0104986_19226	F011669	AGGTGG	MSDDDEDYELANLMYAIATVILALFALVGIAGLAGFIWGIT*
Ga0104986_19227	F004450	AGGAG	MLNWLAAALMAIVMSAAYLLDGPSEHEARIDTAEELIQKMCGENAAWKLLDNGSIQCYTHRGAKTRKVAL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1922

Overview

Ecosystem & Geography

Associated Families

Sequences