Scaffold Ga0104986_1915

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1915
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 45731
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (50.77%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F008401	Metagenome	334	Y
F010682	Metagenome	300	Y
F039113	Metagenome	164	Y
F045546	Metagenome	152	N
F048284	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_191516	F048284	AGCAG	VFSQADYELAARVLGLPVPQTPAEMAAAAPITARVVREFGRGLPPMPGMEEEGMYTGATRSLNAYPNNTQPMLRAQLASRLRTEPERPHEDNYLMELISQLDPEEFDLIMDLLVKLASQSDEHMDMLSSQRPAEYDTPNLGANYSMLNAPSSTHIPPSQEYQTLS*
Ga0104986_191536	F010682	N/A	MVYTPLTNWRYDNSLYHRIQSGPQRTGDNLNLTDTYKVLSSGYMLPSGVQQTWFGVDLEGADFGLIPVGPPNISGYLNTEWRAVPPAISGYWTNYENTLPHASGLLDTYVGFRAQGRYSVAGRTVQTALGPQPGLKDFGTYTWFGASVPDNQNYDPFKTPNSNNPYEYDSDLGAFVGNGITGGPGSFQRVRYPALTNPTNDTSGSRAAWVYSPPVYCQVFTEAIRSDLPGQMSVVSRTSYRGKSTRYVPNYGSVYGVLGEGVRNMIRKVAG*
Ga0104986_191544	F001215	AGGA	MSSTSTNKQPLMVDRPFLRGAKVNNGTTVVTNTSSPDFGDLIQLVRVGDLPSEDGALVEDIFVVANEGYPNNGGVRSAAFGVYIYAPNQAAPSTSASLLISKFEVGLSGDTEGLIQRVELPATVAPTPQTGDFNLVRPIEIGKSEALYLEKGYILCVGYLGNGPAAVSGGLSASGLSIFAQGGFY*
Ga0104986_191545	F045546	AGGCGG	VARKKGSDDFLHSGPRPLGSFKPISNIIGSDKKSQLLRPLPFKRRFRPAINTKDFSVVSEYNYASLWSRWRRGYELSMYAQGAYSGLIYSSFKYYVSGTAGVGGYIPGLFFVYPTLRSDMRMHMVGIRPRDTFNFLDFGISVQSVTQYDETTYAVVLSQRFGSPISYFTGEVLSNRFNSDGTEKQFGYSNYTVTAVGFNGVILEPSINPDFNTLFLSFAADKSWSVVNSTTIVVPATGPPLVGEFLTTEIRVQCSCQDFLNREGFNFYNLSVKQRYPYTSILNVDPGFFDGGPNASGRVSPSNDYPGYARTFGFIYLNKIYTIPSYEDTAVYSDPSLFYFQPKWCKHIYAAFWDMQRKFRLFNVTTSRLPQPNDEPLDEYYREKFEVDLAKQNSFLRREEDLVWWSRYSPSLGGLPKHLLYADKYNMIAKTLNFGQLDDLTELQDTNFQLFTINDFNPLNPATLPQEIYDGGTYSNGVVITSSSNILDGGQYTNGTLLPPSGPPTFINGGTY*
Ga0104986_191548	F008401	N/A	METARLLTIAQTAELLNCSAGFVRKRISLTESNQPGGWPKGIFVNLQPNGAKSLYRIHQDSLQEYLKSGAEVDNEEVNIEESAACAI*
Ga0104986_191555	F039113	N/A	MDSALREIKQIRDAIISIDTSLQLIALSKSSDKRTTVFVSKKVICQRLNVPTVTLDKLIYQGITSGGKSGLVQGIHYCKTDPAEQNSSKFLYDPHAIIQSAWSNFQNND*