Scaffold Ga0104986_1904

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1904
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 42921
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (80.60%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007519	Metagenome / Metatranscriptome	349	Y
F012212	Metagenome / Metatranscriptome	282	Y
F025685	Metagenome	200	Y
F026483	Metagenome / Metatranscriptome	197	Y
F057986	Metagenome	135	Y
F062555	Metagenome	130	Y
F095361	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_190417	F012212	N/A	LNVIDQLVSADSPWPNTETKTVLVCRIPKKDDKPGANEFVDKDGRICRWAVVNRK*
Ga0104986_190420	F026483	GGAG	VISIPVLYICVAAHCEFMQQRTHYTNRQECMEVAEKKRQEYVKLGAKVEATCIDVVVQKRGSYES*
Ga0104986_190438	F062555	GGA	MEIAEIIDYAKPCMDAERALKDAHNAVLEGKMELAMTKTMDALVNVRLMHGALRHMKEQNEKTV*
Ga0104986_190443	F007519	AGGA	MTTGIENLKPIPKRKGRGPSKKPALFATSLRLPRYVLDYFSTHHPYTKQAKIREILTEYVTNQQGASNGNI*
Ga0104986_190448	F095361	AGGAG	MNLNQGGLVEGLVEDLLDTIHKYDDSLYMATVIGCLEFVKQQLIDDAKEQNG*
Ga0104986_190457	F057986	AGGGGG	MIAMMKRLLATPSPLEMVARELVQSQRAKLEAESAMEYALSMVDYNDARIKRLTRRLTELQGEQA*
Ga0104986_190459	F025685	AGGAG	MKYVIDFLTLLGLVCTVIVVGFYMGYATYQPKCGTVVSVFTKECK*