Scaffold Ga0104986_1895

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1895
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 40567
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (65.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F039994	Metagenome	162	N
F086661	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_189511	F039994	AGGA	MTPPTIGELGEAASEIVWRVMGTGSTKSAYGEWFEKDKPTFDYHIQRAIRHNATAQMQIHLNHPQPDNGGETALDHLERAIVRSLFAWAQLKRELPRL*
Ga0104986_189547	F086661	N/A	MKQYIFENSVLVKTIDERSLEKAIALNIEVNREKVSQAISSAGLDTATQQNAALGIYSPERCEAIKNYIAACRNEYMRCKALILAATTNEAADSVQFIAPPVPSSL*
Ga0104986_189555	F000635	AGGAG	MTLSEIATFAGEKIGKTDSDTATFLKKSASLNYRRVWNFAPWRETVTHSTYSVSSSTRTVTLGSNVETPLAVAYGDEELMALDLPTIISQDADLLDADRKGTPNSFYFKGRNTGGTAELDLYPMLETSGTTSLKVVEKLKCLTRNNYVVDFPPSNNALEDELRLPHCHQVILDLTHADALQRERQYEKAASVVQTANADLAAMASYELSQVGSIKQITPSAQGELYRSEIE*