Scaffold Ga0104986_1880

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1880
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 38852
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (87.69%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003784	Metagenome	468	Y
F003863	Metagenome	464	Y
F004110	Metagenome	452	Y
F034113	Metagenome / Metatranscriptome	175	Y
F044438	Metagenome	154	Y
F071028	Metagenome / Metatranscriptome	122	Y
F083706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_188011	F083706	AGGAG	VEHLTPRGWLVVGILIGLATWGLWEVASHLLWTGNGWQWCKDLLTCEGEGK*
Ga0104986_188015	F000821	AGGAG	MNKEYLEAKANLCLNQAEKDLKQEEIAKAIKNLERANSALSRLFGLREEDENE*
Ga0104986_188016	F001477	GAGG	MSNIYTIHPKKSPLILLYEVVDENGNAEWGGNNPEHCMQWLSLAPSNSRVLVSGWESDEEDAHLVGQSLDITDIVRAAIL*
Ga0104986_188017	F003863	GGAGG	MESKQVSGRQVVHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWSITPDARLTVGIHTRANSAPPFGDPADAGEDEGDNGGEA*
Ga0104986_188026	F004110	AGG	VTELDQTIYELAHSVAGTIYRRYKTHVERDDIKQEILAWALTRNMYLALELSEVDTDKRKHNEQRIAWQMRRVAERYARKEKASKSGYQISDEAYYESATVGQLLPFVIASVLDGTVLEQAQQMVQDGQPKGKSSPAEGGNLLAMLIDMKQAYLKLEVEDQTLLRLRHHDSFTLQQIAQLLECAISTADRRCANSLRKLIDNLGGASPFR*
Ga0104986_188027	F003784	GGAG	MYEQERVDKNVTDFAAYGLSDLAAGLSKRDSSDKTNTNPLADHPAVTGYRAAGVSTDDLVSFIESFASLRASRVKKVGHDQYAIANGQKFESFSASDTIRELIEELADASNYIDFLAIKLLNLTQITQDRLGNCD*
Ga0104986_18803	F034113	AGGAG	MALTPSWQTESVEEEYIDKGAVKMPQVNPEVDRKYMAAKAIADATDFVEWPTAVHGQTNQGM*
Ga0104986_188032	F044438	AGGAG	MSNTEMTYVKNRIKKLETDFAAFASLLIQANIVHVGIEDGESVFVVNKVKLDTDEPIQ*
Ga0104986_188058	F071028	AGGAGG	MAYTATTPWEYQTWGAGLPWPDKYSRLAGRPITGGTYDGPINPYMTDIARGVTFIVNGSTVETTLYPYQDDLFNADWYVLGGHNQVITDEQAAVLIAAGYADYVELIV*