Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1872 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1872 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	38002
Total Scaffold Genes	66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	52 (78.79%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

38002

Total Scaffold Genes

66 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

52 (78.79%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025681	Metagenome / Metatranscriptome	200	Y
F046257	Metagenome / Metatranscriptome	151	Y
F061797	Metagenome	131	N
F079822	Metagenome	115	N
F095174	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_187212	F095174	N/A	MTDEKNILYKKDYVTAVKTDIRKTFAKFRKEQKQTQKISTIEKTQPTNIVQYKKFR*
Ga0104986_187219	F046257	N/A	MLKKKIDYDWQAVIDGNRTGITNVIDGIRKGEVDELELEKLNNFVQFSLALMQLSGPTKWAQAKLNAEMMHYLKGE*
Ga0104986_187227	F025681	N/A	VDPLTILAAAKLAASAIKQGCEMYQSAKADGMELVDAYGKVKDVVADISGHLGNFFKAHEQLEKHVYEEELKTKKARDPELSVNQEAFNRILAQKEMIRLETELREMMVYQAPKELGAIWSEFEVMRDRVKAERAEVQRQELLRQQAAIWRRASIKRKIAEQMTLILAVVFIILWFLWVMILIRTSHTFRGQFSLPSLWCVLC*
Ga0104986_187234	F061797	GGTGG	MEYRFIAPQELRQWWASVRTGLEKIKRRSPENWIIEDVYTDCFNQKSLLFVLIENNHFKGFFILQPQGETLHLWAAYSLENSYDVVGNALKYIKGMAVEAKVKYITFSSHRRGWDKRAAQYGFRPKQWICEV*
Ga0104986_187249	F079822	GAGG	VNKTEWAVNLLRDDYFIEMMEELRGMEIAKFLNSEYKDIEIREEAYIRLRVIESIDNYIQGLADQKLIDAKKLKIL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1872

Overview

Ecosystem & Geography

Associated Families

Sequences