Scaffold Ga0104986_1865

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1865
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 37617
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F016149	Metagenome / Metatranscriptome	249	Y
F066596	Metagenome	126	Y
F094997	Metagenome / Metatranscriptome	105	Y
F103142	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_186511	F103142	GGA	MGLNYKDFAWGERITSDEDSVDRFMHEGLVIPHAPSVGDIWHAAEWLATYGSETAEESEGLANVIAFLILTAESKEKRTATNTAKRNYAKEHGLKVSQVRIKK*
Ga0104986_186526	F066596	N/A	LWKYWKGKVEMITPAGIENRLVTLSKEIDYAHANLIEAENKYHKSKSDYEIAIAKARLSFGDNKMRVQDVSDKALLMCEKQFHELSIAEAIVKGARANAGRIRTQVDIARSIGTSVRASLEM*
Ga0104986_186548	F016149	AGG	MVAPDKGVRETEIGRKLYKPDRGGIYTVENASHARAMKAEGFFEASLNPYDVKDGQRGFSCNACGFNGWFKKCGRCGHETDMTIGDGD*
Ga0104986_186550	F002722	AGG	MAGRTGVRATLYSFLNTPAITGLNQVFTSFPKTINFQENSTAGQSSRAALIIFIQSEAETRLAIGGATNGWKRVDYSVVLQVYQHSLLRNAEDVMTDFDTLIDAIKTRLRSNHNFGDTTGNLVWQGAEPMINAQYGEPTTLKEGATETFAELQFVVTEMIQA*
Ga0104986_186554	F094997	N/A	MVRASVNKAVVGLDAGAMAARDEMMMTLIQLSKEEIKGRRQPGEKAQAGQPPMNRTGNLRRGITGERYSTGFASHYALVGPTMIYGRAVEVGGIYAPPSWQNTSAMRGFPYMQPAFKKFSTLAPAIISKHLGLGNA*