Scaffold Ga0104986_1864

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1864
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 37577
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (22.58%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016969	Metagenome / Metatranscriptome	243	Y
F028808	Metagenome / Metatranscriptome	190	N
F029414	Metagenome / Metatranscriptome	188	Y
F041771	Metagenome	159	N
F053851	Metagenome	140	N
F078286	Metagenome / Metatranscriptome	116	N
F093866	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_186422	F016969	N/A	MSNIKLTKAEAEKKVYQLTEDLLHVKKDFKDVAAGYKDRMKEIESEIKAIVEEASIGDSTK*
Ga0104986_186423	F028808	N/A	VWEPTGKLQYIADELDKIPTDNTKLYRGMSEKEYNILKSTGKVTSKGRGNTRNISGSYLASDFKLAARFALVNYRDKGEGIIVVVDKSKLPDLKNVDPGNYVTSYIPIEAVTKIIDLKQL
Ga0104986_186435	F078286	N/A	MAKPEQYGAIADGKTNCAYAINECIRLHNICEFGEGTYIIGGKDIEPNDPLKVLKSGILWGWDPQQNESGVQLIGKGKGKTIIKLSEGLNGRRDLAVNNNQLIMVQAVGPGGDGREDCKNIVFKGITFDGNYDVINEVKGNELTIAGCTTFGSNTLYEDCEFKGFNVGKDNATSFIIISLLSTNSKDDAKGTTVRRCDFHSPGRNNRYPELDTEQIVHVQVGGSLSAKKFATECLIEDCTFRGDAGPTQFSPLAGISVANTKGVVIRNNNFDGFEGMCYYVDTGTNIDTIVEKNSAINVPCFIRLSAQNYVRQYGNEWWAVNYAYHHNLIVINNNVVTTGKGTWNWKPGKYAAWDGVFLAYSMDRDLPNMSSIFKNIIIQDNTINVDPTNLLKNLGGWWPPLNSYLPALPYGMVPNEPVINEIKLINNKNNFVVVVTKSISLFDKIKNFFKKIFKRK*
Ga0104986_186438	F093866	AGG	MNELSKIDMANLVFSNDKKAKIKDVLCSKYGATDVQYRDLTYGICIDVVGTDSFRFVKNAILKTLDVHEETLSILGESKRSMKASYVYLPEKDKVLNKRLKKMKTT*
Ga0104986_18644	F041771	N/A	MKIDVLKEFIKKTVQQEVRSVVQSELKLQLAEIFSKEVLQAKKKSSDSDLEQQILKELETMNESVVEEPVKPAKKFVKYTSNPMLNDILNQTTGGIPQEGGMVNMMGGFGGTTQTTINETKVPENAPAPVKSVYSAMNRDYRSLMKAVDSKKSKV*
Ga0104986_186441	F029414	N/A	MILLKDLLIESPSVLTVYRGVNAAYGDVGLGINSTKIGDKLVATLGPNHTDNLDVAKRFGKQIITTKLNGPGLELSHYNDIVNLYKQYENMLPPGLAKQIKYSSGQEQLDLIQLAGKQLRSILSKKYGYIKSPLAVSDANYLSQKGLTGDLYIPLR*
Ga0104986_186459	F053851	N/A	MHNFTLDYTDGLKIDNNFYDPEFAAGKESHYMVKVYFCHKKIKRSLQTHPDQLGITATIEELESTSNKTLLTVNDCNLGCWIQPSFSKFFVPYHVDIYYNTELYQSDTLDCKFKLVNFTLHPKDDRELYTWMNVIENFKKQMQCDISIKNDTVASTTEFDHIADVKYKTNDANKQYYLGLHIGRFYQPNSQNPDVNYHPTGLHNKNSLDIINDILYYYTTII*