Scaffold Ga0104986_1862

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1862
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 37456
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (88.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F051711	Metagenome	143	Y
F066596	Metagenome	126	Y
F094997	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_186213	F066596	AGG	MVTPQAIENRLASLSKEVDDAHTFLEQAEHAYHKAKTEYEIEIAHNRMKLSTEKMRVQDVQDFALIATQEQYRQLNMAEATVKAARANATRIRTQVDIARSIGTSVRASLEI*
Ga0104986_186239	F002722	AGG	MAGRTGVRATLASFLTTPQITTLNQVFTSFPKRINFQVNSTAGQLSRAAVVVFIQSENETRLAIGGATNGWKRVDYSIVLQVFHHSLHKNAEDAMTDFDTLIDNIKTRLRSDHNFGDTTGTLVWQGAEPIINATYGEPATVAEGATETYAELQFDVTEMIQA*
Ga0104986_186244	F094997	N/A	MVRQALEKAGANMDKGAMAARDEMMLTLIQLSKEQIEGRRPKGEKATSGQPPMNRTGNLRRSIRGEKFRKGFASYSAIVGPTIIYGRAVELGGQWAPDSWRGTSAMAGFPYMKPAFVKFRTVAPAIIAKHIGKVVK*
Ga0104986_186253	F051711	AGG	MAYINQPPDLRSMFADLDSRLRKLETATRFTFPNVTSDPSNPRKGDAWLNTTTNQAKIVDANGTVRILTWT*