Scaffold Ga0104986_1859

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1859
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 37214
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (74.55%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018535	Metagenome / Metatranscriptome	234	Y
F041172	Metagenome	160	Y
F044373	Metagenome / Metatranscriptome	154	Y
F045069	Metagenome	153	N
F081291	Metagenome / Metatranscriptome	114	Y
F102853	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_185939	F102853	GAG	MKELVLIYYAAIVVATVGFLALFIPEERRPTPAECGVAEIAPDMSTRDREVCRQLRQHRHRM*
Ga0104986_18594	F018535	GAGG	MKTQINTSGPQWPQHLWPYTYTHGDTELLCFVDWEPADQSVGMAAGAWLIHAYAGGVDVVDLLKDHIIKDIEREAACSLSSD*
Ga0104986_185940	F044373	N/A	VLTLAAQMKTGGKKMLRDGYFIREEPPKIGAHYTPQFYQKPATPEERFVQDIMLGVPVRYESPVVKFLGRLLSV*
Ga0104986_185943	F081291	GGAGG	VKRIDYWKAKLPGARAEERIRQKELNQMARAFERAVEKVAEIEQRIEDEKDKLASPKR*
Ga0104986_185945	F045069	AGGAG	MRYLLLLLAAPALAAEPAYLTYDDVHVQTVLTQDRPSWCYGMKMAFDIDGLNRAYYGCWAGSQGFVHIEMLDGSKRVIPMAKFNKPKEATK*
Ga0104986_18596	F041172	GGAG	MAKLKTAILRAQETADIIGTNESLLWKAREVLSKALDDPEPFEGMASAETALYLINTYLLENELCKQ*