Scaffold Ga0104986_1841

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1841
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35908
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (84.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001817	Metagenome / Metatranscriptome	630	Y
F002386	Metagenome / Metatranscriptome	565	Y
F005025	Metagenome / Metatranscriptome	414	Y
F025685	Metagenome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_184119	F002386	AGGAG	MKFAFIPKAQYHIGQVIQVHGKPMRVESYTHTGKNVVATTLDWVTNKTPPVRFERIVCVCTDSPAIEGEQA*
Ga0104986_18412	F025685	GAG	VNTERNMKYILDFFADFFALVGLVSTVIVVGFYMGYATYQPKCYTVASVFTKECK*
Ga0104986_184133	F001817	AGGAG	MQQSDVKSAHLSAAGSYYVGRTRLKGFVVAQKASTAVTFEIRNGSATGDILYTMDLTSLAQATTFSVTIPGEGILASTGLYLTLSVGTVTGITVFYG*
Ga0104986_184144	F005025	AGGAG	MMDTKTVKRIADTEAKKMVKGHESRMHAKKMAKGGVTTDQAMKYGRNLARANNQKTG*