Scaffold Ga0104986_1840

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1840
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35890
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (52.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001299	Metagenome / Metatranscriptome	727	Y
F030356	Metagenome	185	Y
F041596	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_184013	F030356	AGGA	MLDIKNVPIDSINQSKVINSRFVRMKNQMDVKMASYLRYLGTKNAVNRATDYHYLVLAVTDSTAPVNGIDYIHPSVKPAVDYATAVITKGLVPNGEVNFEFVADGEPDEAAAKQATDMVSKVVNQMNDPHFVMERWVMDAAMHKNGMMMIKPIREPVVRYVTTEGTADQLMAFEQQAADAGLTALRQSRRKTTVDLEKAMSEIQQNLGPAADAVTQGRLDEFVKNLQQDPDQETEPTDPAQASADSQQTVLTDAITRNTIYSARYKLTGYSINIKFHPIAQHYWICDPTVTEMRDQPFCGYYDPMSIQEAVDLYPGIDLDEFRRHAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSASSADPDSRQISIVTVWNRYDIDGDGELELVELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIGESVIPMQEYATSAARAEIQLGLLTATPRLGVKPDKLDFEMLQDGEAAIFILDSKFDPATDVYPVPPPSGNLQFLEVAMQRIQQDTMSMIGMTTPTDVFNPEVMAPGNSGIKLQMALTPNQIIQDNTVRNCAEGLKEALWLTWRTLIQYGDDYGVKKLAQASHPDKQPEFLDFLAWDDMNFCDRHQVHIELALGMMSEENALARTQIIQKCQMELYSTVQAMVGSGTLTPEIFKKVKKPYEDTLYQLGVKDCNTYLPSDDEVMTMISQAQEAAKNREPSPADKKALADANLSDVKAKQIEAETAGTDAESQLDFMSMAAGDPKVYS*
Ga0104986_184019	F041596	N/A	MKGYVMNKRTITPRPAPVVEPSPWEPAAEDLTVLTTPVEPVPGHTRARPRRPAEPVQVEREFDLEGLMTDFPTARDLERFVYDETGIVLTLKGRANRLKYQVALDTLNGVNVEAKYVGRDNPYLDKTDLVPEDPMQPVPSADAGIPDRSQLQNEFYTAFVPHSDAEYHSQGRKMHCMFRKYKSGMITYEVIGPIEPRPYGEKIDKWGKVRPEIIRWVDPRTGEQIVQRNDGTFTPIGRRLKAMLQTFRYNRTNQWIKYVDRDFVSLDHKAAINPWEIAD*
Ga0104986_18409	F001299	N/A	MSDDLNKPQYLSDQDPEKNHDYWRQDHGGVVTAHNGVADSLLKNDKLYNAMKGNWSRTSMSGSKNIRTTTGREDGRFYIRREQLNSDAVAERCRLYRAAAESGHPDPLAPIGDDGRLTYKWMDLPNVVSIRISDQWFGGMPWAAIKHDRNLKAQFYQIVEQYFPQYICYPGGKLPLPIRPALPNRLGGDRTRFFTGGSQ*