Scaffold Ga0104986_1833

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1833
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35489
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (72.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013881	Metagenome / Metatranscriptome	267	Y
F033724	Metagenome / Metatranscriptome	176	Y
F061667	Metagenome	131	N
F100716	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_183347	F100716	AGGAG	MQNNTTRKFPRTFTEAFPNSLENGAAIEIHVHECSTAEKIIRVISLIGLIVVALDCLVWRV*
Ga0104986_183351	F033724	GAG	MTSVAVTVSARLIPAHYAEWKRLGGINWLRQQLRESIQKQKEQSK*
Ga0104986_18337	F061667	GGAGG	MSAKQDQVGQGKSRMPGRGVKPDFPATDFEIRQASWLAEIDRVKVDQDRKWGTDRLCTLVDPWFREKFWQQQQRVWQACQARDSERLEKSAAGMVRAYQALEAWAVQHAVPVRPAVGAVERVGKDGKLMVVVATKQDAVWYRENRPDVEGQHVWSMEEIELLIEAEINQAVVEAKIRYARFDPVVVKVEKLGGETGFDDFVNDLDLSAPTKAPKMFDSKTAEKFKHGQNRAI*
Ga0104986_18338	F013881	N/A	MPEEMILSMVECGKSIADICVSLGISKRALDQWIDENDMGAMITRARARAADLMACDTITIADGMDVQNPQRDVQRIRTRQWLAERWDQKTYGLQKAQQVNINIGSMRMDALRHAEVIEAELSTGEGK*