Scaffold Ga0104986_1826

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1826
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 34957
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (77.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000340	Metagenome / Metatranscriptome	1267	Y
F007972	Metagenome / Metatranscriptome	341	Y
F043892	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_182615	F007972	N/A	MKLIRLTNATKGRIGEGLILNTEAMMSFFENQQEDGTKVSVAFGMNGNSWEVQESIDEIMEMINGA*
Ga0104986_182617	F000340	AGCAGG	MNWQDVLKAIIPIVVAALAWLLGQVSEFSTRLTKIEGSMPALITPAGTPTDSPISAEARHRLKEEIYKDIHDLQVRIKLMEERARIYAK*
Ga0104986_182625	F043892	GGAGG	MRLADAINWMMTYDALQPDLIDVSNWRPHDPRRYDEQRKECIKYLRERNLYILDGHFTPTKSSHTDVSVIFNRARQQQGDKLIQVAK*