Scaffold Ga0104986_1806

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1806
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 33483
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (70.59%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004668	Metagenome / Metatranscriptome	428	Y
F006467	Metagenome / Metatranscriptome	372	Y
F007913	Metagenome / Metatranscriptome	342	Y
F046346	Metagenome	151	N
F053078	Metagenome	141	N
F078653	Metagenome	116	N
F091586	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_180625	F007913	GGAG	VTKSQVDAILERLDRIESDLACVRVEMAETRGAYRLAKFVIALLGLSGLGGLTAWLSNSK
Ga0104986_180627	F006467	AGGAG	MFRNIILDLIGGAWTILGLLFAVVVLPEGQTQSTMAALFILLTIVWIATGPLRWRD*
Ga0104986_180628	F004668	GGAGG	MGRSTDHIDDIHEQGWTRVDTAPGEWVALVPNEDNSAFGGTLWKRGEDGTDYSEGCTAGHPVSAAKGFEEAARAVAVIVKQENPS*
Ga0104986_180629	F046346	AGGAG	MRIKSQLYSDAEAQKKVGAILDDCGPSSAAAAVAYVNGYNPDLKASDGVAAKARATGFVEKQGVSDNGSSLPELMKTVRELGGKARPADTFAEAVEAAKAGAALIVWVQAPIGYPKQALSKWHRNWAKYWEKKDPKVIAAGYGHMTSASYDADAKTFQFADPTFDDKDPKEQFAVAITEADLKAIASGKPGSPASHIVIVTKKETV*
Ga0104986_180646	F091586	AGGAGG	VIQVRSVNGAHLKHILSVNYPRLYAVAIPQMARALGISKRTLYAYIQEERRVPEYVEERIINLYGEIPPSGWRTVEARGLHTITPPESVETAQPQALELSVSADANWVEIAQASVMAVAERLHGHKMGEWVGNPEMLDVDGNPLDLVTECGRCGMLVAIDAGLKEVNGFAWRAFCGSDNLWRGAR*
Ga0104986_180649	F053078	AGGAG	MRLDSLVTWFREHQDTLPIVIHQINQMDDGGVPKWTGDFATYLNAAAHATFSEQEERRVHEGTQAEQATLMQVTVQRYKYPMHAALHTLKRCRGRAGEPKPHEIGTMLIATRGNLTAAQEWLMRKYPLMLHREIWLEAAERTLNLLHERYTETPRAIVRGKSEAQLNAEVTDAQAPDKA*
Ga0104986_180650	F078653	GAGG	MPKHPTKPDKYAALEAYVASCLPLLRLENWKITILNDVAPEDRYADIEPNDQAQTANLRVGNLFWAQKPHEQRLTIAHELVHLHLCRLDQAVDRLEPVLGSAAWAPWAGVYEDAYERATDAIADVLAPQIPEPNL*