Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1800 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1800 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	33085
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (76.92%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

33085

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (76.92%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F001097	Metagenome / Metatranscriptome	780	Y
F001713	Metagenome	648	Y
F001799	Metagenome / Metatranscriptome	632	Y
F002487	Metagenome / Metatranscriptome	554	Y
F053242	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_180012	F001713	AGGA	MKYEFDTTTGEGSVIVTVVMTYEQDEEGTYNENIDEVWFEGRNVMGIFTDVQFKELEMEGTMRLTSHLLAESDHAKTIAYDHD*
Ga0104986_180015	F001097	GGA	MNFQWDIDDFRRIRTLQKLRSPRVDTQVQPKEIDDWLKQSVALVEGCVRGLGTNQRKVRYFAFEGQNEQTKE*
Ga0104986_180020	F002487	N/A	MTRQDAIKDLSHDDYCCYCAETKGSKYTCCHENHFVPFEDLYEEDKEALIEEYLSEGK*
Ga0104986_180023	F053242	N/A	MICERKGHFLIGEWKKPNENMATGQQLLLKAFAQVPKFTVLVIIGNTDGETEVGDVFQVVLGKCVKIGEGLDYLKDFYVMWYEFANSKG*
Ga0104986_180027	F000166	AGG	MSNIPTPEDAKLFAQSVRKWQQVLSLGDWRIEKGSKPAKQAMASVEFNQTARLATYRLGDFGAEKITPDSLDKTALHELLHIFLHDLMCVATDPKSSDEEIEMQEHRVINLLENLLSKDSNEFT*
Ga0104986_180049	F001799	GGA	MDKHLLAQWAKNLLNDDFFKEVLNNLKNEQISVIINTSAEESDRREDAYRHIKTLELITGHLEGLASETVIKEKKWKIL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1800

Overview

Ecosystem & Geography

Associated Families

Sequences