Scaffold Ga0104986_1794

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1794
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 32831
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (80.85%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009952	Metagenome / Metatranscriptome	310	Y
F015860	Metagenome	251	Y
F032265	Metagenome	180	Y
F036215	Metagenome	170	Y
F058955	Metagenome / Metatranscriptome	134	Y
F095419	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_179416	F009952	N/A	MKVGQIIRDAQLDLFEQRDADFLARCRAVAAEVCRQHGSVSINDVRERVQLPAHLHPSVLGAVFRTKQFVKVGLVEANHPQAHARVVRVYQLQE*
Ga0104986_179431	F058955	N/A	MATRIESGQIQVRGVGNVPMVQVQQQPVDFIGPRAAAQTNNQLAQILDRMSANLFQTAAEMRQQEGFQFAAQNPLTPQQLQLAKDGVNPEGWFMGPDGQQAQIPTVASAGYFAKAVAKARSLELAGHFEIEGRNELTKLLTDVEAGNATSAQVSDKIKVMSEGYAKSLANIDPEAAIKFRATMATHGNTVLNAAYKSELDRAKAQRIAKFDSDFDNSTRLLEATISQGSWTDANGQQRSIDDLADVFRKNVLTQSLLLGDKALQTEYSTKFETALRNAKINAVTKALIKDENMMDPERTLQKIRSGDLGNMSPVLQSMIVNDFDAVAKVTANFMVAVNNRKSIKDAKAEEAKKQGEAQAINLLEQIFPLPDGSPKKKQLIDQLTALPEGSVPIGTLKDLLSPQGESNPVVQFNLLSGIYNNTITDPKQIWGLVGKGLTGKDAVAALKILQSEDRRDSSELDRGISRLAGIPVIPGSVVVLDPKGEEFKRRSELQKQAFQIQAQAAGEGKSLTPRQILTQLEDGLTKRRSTEDAKAAQRQLDEFAKRPDGSYKPGRDWITGPVTRETLPALKQKAGNDPNKLRQITEIEKLLTRAEGY*
Ga0104986_179444	F032265	GAGG	MATLPQFKQQQLARRSSSDIQRLAEQYKKNVAGITGEYETAFTGYQAGVAEKMKPFEEQMATYKESLLPTYEAQKAAYMKKLDDYNKLLADIQANPVTEATGIKETKTPRFGLFGLLGYNTKRESFTYYVPKEIPKFTEQAPTPPETPQAPTIEEFDSSQFEAKRAQAQGEFSREVGERRAAKLGAVSRRATRPLLAGAQQ*
Ga0104986_17945	F095419	AGGA	MTNDNEIKPSEGRAWKNAEKTELWHGDYKGTFVMPDGTKHFLDIYVNKKPDGGVWFKIKVGKAKTGGGGPVAAAAPVFAAPQPSPKAVVPDNDDDIPF*
Ga0104986_17947	F036215	AGAAG	VSSGDELACRACGRVHPDAKLITLPDGTVVGSYSSAYRAYTEAKWVLDKLPVTVNRRRKSTPQISRRDYIMSVIDKRGQESANELAAMVTKLWKASK*
Ga0104986_17949	F015860	GGAG	MMHISYVKLFRDDEGTVRDSQEANGEFRNLQHQIELLKQALEREMNMVADLRELLDSVRRIAYELNEEILKDNNAKG*