Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1781 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1781 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	31932
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (80.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

31932

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (80.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004668	Metagenome / Metatranscriptome	428	Y
F006467	Metagenome / Metatranscriptome	372	Y
F053078	Metagenome	141	N
F071968	Metagenome	121	N
F078653	Metagenome	116	N
F091586	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_178110	F053078	GAGG	MMRLDSLLAWFNEHQDSLPIVIHRLNHMDDGGVPAWTGEFATYLDHAAHATFAETEERKVHDGTAAEQATLLRVTIQRYKYPMHSALHTLKRCRAKQGEPKPHEIGIALIATRGSLTASQEWLMRKYPLMLHRDIWLEAAERTLHLLHERYTETPRAIVRGKSDSQLNAEVTDAQASNQA
Ga0104986_178111	F091586	GGAGG	VIQIRSVNGAHLKRVLSLNYPSVYAVAIPQMARALGISKRTLYAYIQEERRVPEYVEERIINLWGEIPQSGWRIVESLKPHTITPPPDPRLPEAQAIDLEVSADANWTEIAQASVTAVADKLHGHTMGEWVGHPEMLDVDGKPLDLVAECRRCGMIVAIDAGLREVNGFAWRAFCGSNNLWRGAR*
Ga0104986_178118	F071968	GGAGG	MAWIKKDTRTLKDPKIVELLAQAKGAEAYVLWDAALFEAYHQTPKGEFANEAHLKACVAGVADIKHLKRLLALGLLTRGEGGSIIVTNWGKHQADPTAAARKERFKNAHGTDLERNQNALEKNRTEQIENRLSYSKSGMASIGEILARGGKK*
Ga0104986_178131	F004668	GGAGG	MARTEDHIDDIHEQGWTRVETAPNEWVALVPNEDNSAFGGTLWKRSEDGIDYSEGCTAGHPVSAALGFEEAARAVAVIVKAENPA*
Ga0104986_178132	F006467	AGG	MIKNIILDLIGGAWTILGLLFAVVVLPEGQTQSTMAALFILLTIAWIATGPLRWRD*
Ga0104986_17819	F078653	GAGG	MPKHPTKPDKYAALEAYVAACLPALNLSNWKVTILTDVAPEDRYADIEPNDQAQTASLRVGNLFWAQKPEEQRLTIVHELIHLHLCRLDQTVDRLEPVLGSAAWAPWAAVYEDVYERATDAMAEILAPQVDLPNL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1781

Overview

Ecosystem & Geography

Associated Families

Sequences