Scaffold Ga0104986_1780

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1780
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 31900
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (83.87%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012212	Metagenome / Metatranscriptome	282	Y
F026483	Metagenome / Metatranscriptome	197	Y
F044314	Metagenome	154	Y
F057986	Metagenome	135	Y
F096643	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_178033	F096643	N/A	MVRPTEPSATNFLRKLKTEEKMILLAAGNGCTTRGFNNCLDAMQVLWNLGYRPDADLTEWLAMVQADEKNGA*
Ga0104986_178036	F044314	GGA	MFDAEEIRNRVFADMVRLCKLAAWKEWAWTEVKRMDEDDLFRGIKAHVLGEMKK*
Ga0104986_178049	F057986	GGAG	MKQFIKQLLTPLTPLELAARELIEAQRSKLEAETALDYASHMVMYHDARISRLSDRLGELKGD*
Ga0104986_178055	F026483	N/A	MNGHCEFFQQLAHYTDRQQCIAVVMAKKEEFIKMGATVDATCIDLIVQKRGFYES*
Ga0104986_178059	F012212	GAG	MFNAFLASAESPWPGTETKTVLVCRTPKKDEDKMLRANEFLDKDGRICRWAVVNKK*