Scaffold Ga0104986_1779

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1779
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 31886
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (84.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016392	Metagenome	247	Y
F017294	Metagenome / Metatranscriptome	241	Y
F086848	Metagenome	110	N
F095169	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_177910	F016392	AGGAG	MTNAFDYKGQPSVWLSDEKMKRFKQGEDFAKRKQDKRDINEKNQVFIYSKALSHKK*
Ga0104986_177913	F095169	AGGA	MNWRDLTIKYVKDLLRAKTPLEMVQKELIEAQLAKLQAETSVEYSQSIVNYNEQRISRLNKRILELQEIEHE*
Ga0104986_177916	F086848	AGGAG	MTMEKELEELISKIAPSKDIAGGFMTRDQIIQLIHKVATEAALIGYANAERSTRNRMEKKLKMVEEELTIIKEQLKDAELELIATTK*
Ga0104986_177920	F017294	AGGAG	MRVTHLNKSGTGWSSKTACGRNLLRTPVSTNWSEFKQEPIQFRCIKCVASKQFEVNTKMDAKKVAA*