Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1778 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1778 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	31759
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (72.22%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

31759

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (72.22%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001538	Metagenome / Metatranscriptome	674	Y
F002099	Metagenome / Metatranscriptome	593	Y
F011829	Metagenome	286	Y
F017452	Metagenome	240	Y
F017789	Metagenome	238	Y
F100670	Metagenome	102	N
F105153	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_177817	F105153	GGAG	MRITDKAKALAYHTSGAYSFDAYKNWDAVIQMCLDLGYSEMETEAIVRSKWTRWACDSDTNRGGRYGYHTSNALKRFLVGTPKKEVNDLVFETFGFTE*
Ga0104986_177820	F017789	N/A	MAITDLADLETNGSIPNDWRFTVCKGKILYDEVGSAWRERSENTVYLSHKNEPTSKQRWFHPDTVVEIYKVY*
Ga0104986_177828	F100670	GAGG	MEALLASFLESLMPAAVGGSEAVMGGGAAPMSFGDALGGFAQNQINQQMAPAMEAYKGITNPNATMGDMANSAFKYSFNPKEDEKSLMLPQMGGNYGGSMANNYVGGIPSLLQNTGSGILPYIGSR*
Ga0104986_177847	F002099	N/A	LGDAVRWLVALVLILSLQSTGKDLCSVREFYSIAWGIHDPTERHKQMVEWLTKHQHLCKSTDFKVIWNNLAEWAGNADSHHLRALVIHGYKEALEREKN*
Ga0104986_177848	F001538	GGA	MIDTIKLFPTVQPSGYPDRHDLAQVKLEKQHEMNKANELAKQKQTQLQDLLFEIYTKKVVQERLRMEIFQNRKLDIYV*
Ga0104986_177852	F011829	AGG	MPNIPTPQDVVHFAHCVKKWQQVLSLGDWRIEKGSKPAKAAMASVEFNQNARLATYRLGDFGAEKITQDSLDKTALHELLHVFLHDC*
Ga0104986_17787	F017452	AGGAG	MKTDEDDEFDRIEHENQMRGQPYHFEVFVSPSQRNQVLEEVAKEFDKMKAFGNTAQSFATFVRDLKTLPSI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1778

Overview

Ecosystem & Geography

Associated Families

Sequences