Scaffold Ga0104986_1771

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1771
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 31290
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (55.32%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000370	Metagenome / Metatranscriptome	1221	Y
F006784	Metagenome / Metatranscriptome	364	Y
F070034	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_177116	F070034	AGGAG	MANTTFQGPVVSLNGIIGGPNPNAGSGANDTEQGGNVVYSFSNVTTLIISSGQYSGTTLLATASRGALVFTSNCCSSVAGYVFSDGTTWKQVNAPASNISDV*
Ga0104986_177117	F000370	AGGAG	MGMYKSDVKPVICDANTSTAVLFTGPTRLRGFMIQAGGTSGACIINGLSDTSTVSTSTNTQVYIPVQVGANQTETLNLPEDGVLYAQRNGTGIVDGIGIASNTSGLTVTLFIDK*
Ga0104986_177139	F006784	AGG	MGEVIKIECKTKEIIKSKKTGKTYENMEEFLKENTMEDLQKDLNVMVTNKGLDLMNKIFNNK*