Scaffold Ga0104986_1767

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1767
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 30575
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (65.91%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F008130	Metagenome	338	N
F014617	Metagenome / Metatranscriptome	261	Y
F014971	Metagenome	258	Y
F033015	Metagenome	178	Y
F044491	Metagenome	154	N
F053133	Metagenome	141	Y
F080030	Metagenome	115	N
F095420	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_176710	F014971	AGG	MTYAEAVEMYPHDEVYIQIDGVIRPMTPAEYEAFIQRQVDYVPFP*
Ga0104986_176715	F080030	AGCAGG	MRIKLKLVRDVGSEPEYLYTTLFSTALWEEKFNKKPLDAEQSGWRDWSFWAYTILKVKGEKLPDDFMEWLKENPNMTVLPEADLTNPNPTDAALTDGN*
Ga0104986_176717	F014617	AGG	MTYLVASTKVGIIGKTYVPTDGINVQALLDGGFIVEQSTPKAKKPAKTNTDTDQKD*
Ga0104986_176719	F044491	AGGCGG	MSTYTTASKQLISNYACISTLEPTDIALGENITVAGLASPFNGTFKVLDLPQYEFTSVDSTTGEFQFDVNVPRANQIIYAATGSNVEYVVTYAGTVTYTQLCTWITVADLVTYLGVTISNPSDDYTLATQATNAANVFCYRRRQESGYHDALTTSPGTDATLGTLMYGAALWRSRGSIETAYAAFDTMGTPTQQSLTPIVKQLLGIPRPAVA*
Ga0104986_17673	F053133	N/A	MSNPNEHYDRLHDHMMAIARERDWLQKEVERLTDELHLAHEALKREFVDKGIMKAITQ*
Ga0104986_176731	F095420	AGAAGG	MNPKVGPSTVAALIGIATVLSAFVSTWVEGNPSTALAAVAAALTAALGVLRSWQSVSADKGTDTSEDASQSQ*
Ga0104986_176733	F033015	AGG	MSPDDVAELKREMVQLREAVSVVESLQREANGRVGTLEGRMFEVELWRARLQGAAATSRIVWLLAGGALTGIILEIVKNT*
Ga0104986_17676	F000722	N/A	MGCARLMTDAQYPETGITEETRRMYPDNYSDKLGKVFGEMIDDIVRPNHVARPEPPDHSNLLDELTMMYDAHMTIGGEQNRFNASVIRAAINVIRAL*
Ga0104986_17677	F008130	N/A	MPYGGNTGDKGDAMADAKTYIYEVYTTHLDSQQMVLVQIFRDPETDEVLHAQIAFKDAIGDSWQTPYQLEKK*