Scaffold Ga0104986_1763

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1763
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 30149
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (60.42%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F011374	Metagenome / Metatranscriptome	291	Y
F023064	Metagenome	211	Y
F086832	Metagenome	110	N
F100720	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_176319	F011374	AGG	VAVYQDLKKTGNDLSKITSEVGGALSSFFKGQAELESSHEKAEVQREENKRKGIKDDLATQAIDNVMFLRQTKQFYADLERMVRWEMGQPDLWREIVEEYQRLLEQKAEDNARELHKKRVAEWRRQRLKNRIVDRALETALVLFVAAYLIILMWMINLHHKGRLGTFLS*
Ga0104986_176324	F002764	GGGGG	MTDEDEAFEDLAKRQGDWGLQGSRKHQIMRFAENAERNAVIEEVAQELDKFAGPFGRDTVQSFAAYVRGMKK*
Ga0104986_176330	F023064	GGAGG	MNADELIDNIKFIADRQYEGEPAQNRLAYHVGLLESHLRGYIQTAEIAQEYIKELQTQLTAKDSE*
Ga0104986_176331	F100720	N/A	MNEAFPKTVQYGAAIEIHVAQTSIGERWIRAIALLGLIVVLLDVLVWRP*
Ga0104986_176336	F086832	N/A	MEMRITPVSLSTERLRLLETMRHTEAKEWLQRHNQKIKDLGKEKATAWWQATIADIARRRGEVAADDLRKRMNAIRRQG*