Scaffold Ga0104986_1762

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1762
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 30061
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (82.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F001538	Metagenome / Metatranscriptome	674	Y
F002099	Metagenome / Metatranscriptome	593	Y
F007518	Metagenome	349	Y
F014365	Metagenome	263	Y
F054866	Metagenome	139	Y
F093536	Metagenome	106	Y
F104706	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_176211	F054866	GAGG	MSKYTITHGSIASVQYVTLPDGQKVIVTYAQDGSEKELPKLPIEVQAFVNRQFGIIFILPYESRQDFIDNSIPFEIEVKP*
Ga0104986_176215	F014365	N/A	MLGIKMQTYQIFKNVSYEYFIEAETLEEAQNKIIDENPDYESEELIEWVFLDEHDGENWKYEPVLQAS*
Ga0104986_176217	F007518	AGG	MTDWTKEEDEAFNAVEQQSNLGKQILRNIGQPYHFDVFVSTSQRNQVLEEVAKEIEKMTAFGKDTISSFSIHIRNMKRTEG*
Ga0104986_176235	F000166	AGG	MPNIPTPQDVVHFAHCVKKWQQVLSLGDWRIEKGSKPAKAAMASVEFNSAARLATYRLGDFGAEKITPESLDQTALHELLHVFLHDLMTVAQDPKSSQDEVEMQEHRVINLLEKLLSRDSNGRS*
Ga0104986_176239	F001538	GGAG	MIDTIKLFPTVQPSGYPDRHDLAQAKLEKQHEMNKVNEIAKQKKTELQDLAFEIYTKKVVQERLRMEIFQNRKLDIYV*
Ga0104986_176240	F002099	N/A	LGDAVRWLVALVLILSLQSTGKDLCSVREFYSIAWGIHDPTERHRLMVEWLTKHQQLCRSTDFKVIWNNLAEWAGNADSHHLRALVIHGYKEALEREKK*
Ga0104986_17626	F104706	GAGG	MGRPSKPNTRYFQRTLTDPQRIILLSAGKGNICRGFENVLDLYHYAHNQGFRPDMDMSILNIVADKQQPLTEDSMVG*
Ga0104986_17629	F093536	AGG	MQTTSNNFHSMRGHVADGCVIVAPSGKQFTLKNTIKGWMVYGSDNLPISGHLPSAYDVEYFVVNGLQNS*