Scaffold Ga0104986_1751

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1751
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 28460
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (29.69%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F005387	Metagenome / Metatranscriptome	402	Y
F008235	Metagenome / Metatranscriptome	336	N
F010913	Metagenome / Metatranscriptome	297	N
F014847	Metagenome / Metatranscriptome	259	Y
F015581	Metagenome / Metatranscriptome	253	Y
F016528	Metagenome / Metatranscriptome	246	N
F024308	Metagenome / Metatranscriptome	206	N
F024548	Metagenome / Metatranscriptome	205	Y
F028095	Metagenome	192	Y
F041194	Metagenome	160	Y
F065436	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_175117	F008235	N/A	MINYLKNLFKKPETTPVEQPKNKYYLAKYRSNVSLHITYNQLDTDGYHEYRQYENIESDDNVVFLEQKNKSIKAYQEVISNINEQLKDNSSEYIMVQKVFLFKKSDFVNVKITIKDNK*
Ga0104986_175131	F005387	N/A	MEKLNRKGFFSTLFGGIAGVVAGSTVKASEPSVPTPPVVENVLTCEKLVFTRSDGATCVMQFRDSDNFEILVNNSENISINICSPLNKPAVVKAETNSFGYYGAESRLTIASNGNIGLGTHTPTAKLDIRCDS*
Ga0104986_175140	F065436	N/A	MKYKYSIKIHNVIDYSELENIMNDYGRDGYRVTKAEFVGDVFENNRPVKKFVVYLEKKIKK*
Ga0104986_175143	F024548	N/A	MKSADNVVELTESDIKKYTKLKEGTKIEPNDCVHIYDNFYAKLSKGSIVCKEVVNKYNTILRKK*
Ga0104986_175146	F015581	N/A	MNELTKPNAFVFKAFIDNEYKLCVCPRIDNKWSEADIVYIQDYDGAFDDVLHEKYFSVLFVGYEKTNDTNGKFTLKNVNAQYIKSDTAIASDMYADNSFFSTIEKGYQHFYEQSITSEREGIVSQTSEQENL*
Ga0104986_175147	F024308	N/A	VKKVILTKIEYDFLIECLEKLEKHTDDSPADSKWFEKMDTTRRLYELEMEHFNIKKYGDPSTKYQMVKWLLTKVKTKSLDF*
Ga0104986_175149	F041194	N/A	MDNLQITCNYCDMPAKLKRVKIYMQCHCCDDRRIIDLREYLLEDKHHDYLYSMFNDNFVYNEAKA*
Ga0104986_175153	F016528	N/A	MINNNELFAKVLAENPLPYHYGDKVNTNRGIGFISGYNFKDREKTWKFTIRPFGLSNYYTDVETVYGKVD*
Ga0104986_175154	F014847	AGG	MEFESNEENLANTMDCIRNLHEENARLMQEVEQLKEENKELNRKLKSIQALFL*
Ga0104986_175155	F000962	GGA	MNIHVPEEIKNKYPHMEFRGKQRILNDRTVIEAYNHATEQNFFYSFEEDFFWFPSQIPDYKLPKVS*
Ga0104986_175156	F028095	N/A	MSEQTYMKLQDKVNRPKLSRENINRENKQFKRVVDQYEQWCTSGGGYETRETYEDDIIDCLFESDNDGYALATFLKEKVYIEPDSELVDILDCVSNVMYSLSKEIIGQWTKENFLEIPSDVIGKKVNAKQGYKKYENHYITGIKPETYEVTVAEVFNKKGGWVVRYEDITLL*
Ga0104986_175160	F010913	N/A	MNTLKKFFKAVFGNNDNSECYNLMLLKAVLDSNKQQIERLNEIMAAINNLQDALARLSAATDSAVTVLNTPHPSEEAIQAAADLVNAQAARLEAASDNDPTTTA*