Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1741 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1741 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	27293
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (79.07%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

27293

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (79.07%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003067	Metagenome / Metatranscriptome	509	Y
F013890	Metagenome	267	Y
F020906	Metagenome	221	Y
F028112	Metagenome	192	N
F046904	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_174112	F020906	AGGA	MPTSAQVSVGATATVLVAATGFDQTVWLHNSGGGVVYIGAANVSTTNGYKLDNGDKMELPVGDNEGLYGVTTSGTNTVCVLKQIN*
Ga0104986_174114	F003067	AGG	MNQAQSYVALLLGIATLSGFMAGLVRHLVKYYLAELKPDGNGGHNLRGRVDRIEQRVDKIYEMLLEDRLAK*
Ga0104986_174115	F046904	AGG	MNSLDLMVVGMLCLFVGLFIYAAYEIGYKVGLGEGYLRGRNIAKALREHEASK*
Ga0104986_174129	F028112	AGGA	MTWLPEWRITVGTTVYTNVTAVSVTTGRIDIDRQCQAGYARMDIVNSTNALFDIDVTDSLTLELKDSGGTYVPVFGGTVSDFTTSVRSPEETGFVTIGTILAVGALAKLPKAIYTAAVAHDLDGVQISTILSDLLVNQWQEVAPTLTWAAYDPTTTWANAENVGLGEIDTGLYQMDNLSAADRNTQTLVQQIADSALGTLYEDKQGRVSYADADHRSTYLAANGSTELDGNYASPASVKSILQIGKIRNSEIVRYGNDYGSTYSATDDPSIATYGRYQRSFDSNIRYLADITDIVSRDLALRATPRTQLDQITFRLDNPLMPDVLRDDLINLFFGEPVVITNLPFNMFEGYFSGFVEGISMRATPTFVDITIYVSPTDFSLIAPTWETVIPTNTIWSGVNGTLQWSKAIGALT*
Ga0104986_174139	F013890	N/A	MGYVEFYNETTGEWTNIEDVPLYDTINCQLCNEPTEAHDIVAEIKFKDDQPIVGAWQCRKCKAVNG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1741

Overview

Ecosystem & Geography

Associated Families

Sequences