Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1735 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1735 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	26933
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (26.92%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

26933

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (26.92%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052556	Metagenome / Metatranscriptome	142	N
F053897	Metagenome	140	Y
F063632	Metagenome	129	N
F065720	Metagenome / Metatranscriptome	127	Y
F067673	Metagenome	125	N
F079983	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_173510	F053897	AGG	MSAHINAVKLFDWVLKHPGREAAFGSSPDIDVVMHCDRILKGKDSELFVIEKENETPLIALWCELDHERKNIHILTILGDRGSLREAVGAWTDLYPDWSVSGARRKSKQNVQYKLSEFIKQ*
Ga0104986_173512	F067673	N/A	MNSLIQQVSETVGVLPDSQDKENQVLGWLNRAAVMIYDQYDLPGSVFEQFFCVDNNQHVVTFPWYVGAIRGVRWHDSSRLVTLTDMRPRYHAVPWTQPYLKWRQMQSTPLHTPLTNAGPLTFQISAIETEPFDVIVNGQTSRAANVTEIISFTPGDLVKSTVNLFEPESPFGITSIKKSRYTNSDVVILNSATQGEIGRIPNNQLYASNLRVQILDWNAGVPFIIGEDCVEVLFKQRFSPFVNLDSIWTDERLIQALVYAVKYIYAVEKEKMDVASVSKDLFEGICKKVCENLESGTELMVQTERHATQNAAIMFPTWPLVQGGVRNLW*
Ga0104986_173517	F065720	AGGA	MSFLSDLVMKILRWFYELSQKDLTSQDAKKDDKLKQNLLDRVDAYERELLIESDLRAKRAANAPSRADKSTRVDFRFKRPSDQIKK*
Ga0104986_173519	F063632	N/A	MKTLIEFLGNFFKNNGHLRGALYFSIAALTPMAASFVEWASQDGPKNWYEVIALAFGSLISGLTAVRAYLDTHLSNGTNTHE*
Ga0104986_173520	F052556	N/A	MIKFELTPEEANGVLQLIDIAIKAGGIANAKVGLPIFDKIMAAAQASGVPQPAETSQE*
Ga0104986_173525	F079983	GGA	MGDILQGVIAENSPIVTQVHRPKNITELPLKTVASTWERTNQSRVKRHNFESPQFNFLPSFRDFRTKQLKFAAEDLSKQIAVGYDFFTRDNVFQNSPFVYVVGNATAGELPLINAPAALPTDSSAIKDTAWVAAQSAKIGSDENGFLSYRQIQAVVSYAKNYLMIPPMEGIQTSAPADDEMIKGKYVLVGGSEIYEGLAFDAHVLNTRPLAMNLLNSSFQGAIGPNIIFRSEFYPLRFTETGTMPPPEIELVLPDSGYSTPNATRQTVVNPDYARAAIGVAFLIGYNPYEQIDVGPPPSEFTGAAINGKRFNQLTWNGEVRLTDNVLVNYGSNNLDTNKYGEFLQLISDTVLGIIGNTPRNVIPIIYRRQIAPSLFV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1735

Overview

Ecosystem & Geography

Associated Families

Sequences