Scaffold Ga0104986_1724

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1724
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25991
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (51.43%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011284	Metagenome	292	N
F012113	Metagenome / Metatranscriptome	283	Y
F014487	Metagenome / Metatranscriptome	262	Y
F025739	Metagenome / Metatranscriptome	200	Y
F081046	Metagenome	114	N
F086811	Metagenome	110	N
F088509	Metagenome	109	N
F093506	Metagenome	106	Y
F104721	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_172413	F104721	N/A	MQEKILYTRNIKLASTLATFGIPFREKEPMAVIEDADDNNRRSVTFFFSDLPSGLGGKIVDMWEKGWSAITNYDDPIAYCRAVLENRERLLDAMNNATPLIKKQFGKATLLVSKNASPELRKKLSKYL*
Ga0104986_172418	F014487	N/A	MPILLLTLFLCSCSPRHTETDTQLPRYSDMSAAEDAMNAGKAK*
Ga0104986_17242	F011284	AGCAG	MTSEKVVEKPKKHFTQKHELHLTTLQMAAVESMDKKYKRGVEEHGGTKLWEMPAVRLVENAIEEATDQLTYLLTLRSQMHIVLELARDGCTDETLTNPRARECCNLIYTTLTGQTKPPL*
Ga0104986_172421	F086811	N/A	MIGPQFKIEDALASLLTPISGLNVCIANRRGLRLFPYATIKASIGSQQIIPYSGVFEISVELNYSDSATRTTQAIFDDNYYNIFSTLYSNNNTLKSKVQDKLTDLKVFMGRITSQSPTIRADKRAWQRGLTLSFIVTPDPTADGTRNYDFSDFLNSFYLGTI*
Ga0104986_172422	F088509	N/A	MISIERQIENGLATALAGISGVNIYKSDTEGQRLLPNLVVQASISSEEVIPYSGVFRCPSTITYATRADTTTRTDFDAKFQEVLQVMYQEPNLASVLTTATLKVFLANVTSESPDIRAENRTWAKTISIDISCTSI*
Ga0104986_172424	F081046	GAG	MTAKTIKYSQRLGDIIRCLPACKYLADQGYEVFFDCLPQYHGIFEMVSYVKVGSKGDVIDLEIWPNKYQEYRFSGKTWTEFVYAHPEINKADPKDILFDKLDDTPAKGLPETYNMVAPFGISQGHKRDPLQIIVEARKKCGGDNFFVLCQGTEIKGLQTYTAPSIPELARAIRGAEEFWSIDSGQMAIAAGVRKDKKVVYFPQTIEPFAKDNIFIWDSVEIN*
Ga0104986_17244	F025739	GAG	MKKLLTTAVSVIRKSILGFIAASLICGCATTRPYDIGEVPNQDSISDFIMRWDKLDRTKATPDEYRQLFGQALKTISRLVEENEKLRKRLDQ*
Ga0104986_17245	F012113	N/A	MNQLLAFVQSQDVFAWLGALVALLSAVIAVASLIPGDEPEATLTKIVSFLSKFSRK*
Ga0104986_17249	F093506	AGTAG	MATTILSNISSFDYEPDIITDNGRDGITTFQFSVVGSFSALNSNFSLDEVLVGVPDQPPGNFRVVRRNMSHIAGNTSDGLYRLQVSAEGGTGDNSLYILETSYQYQREIVSGFVQTIQLDISVNYICEWLSPTATITTNSQTEDVTAVQDRVRSIVASQEVQIIRNKPDRSAVIGTVQYPVFGPGIDVNSINIVGSSVETAGGLFRVRASATKGQMQLVL*