Scaffold Ga0104986_1706

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1706
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 24890
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (79.55%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F002764	Metagenome	531	Y
F011742	Metagenome	287	N
F012211	Metagenome / Metatranscriptome	282	N
F020138	Metagenome	225	Y
F032955	Metagenome	178	Y
F040522	Metagenome	161	N
F044970	Metagenome	153	N
F071155	Metagenome / Metatranscriptome	122	Y
F097199	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_170610	F002707	AGGA	MTQSQALTQALVLAIIAPDDVKAAQASTLAEQIAQGLTRAQVNRCKAQALKMIGENP*
Ga0104986_170615	F071155	N/A	MRHDIDWHKVHAKVGQKIPVYPFKTNETPFIGTVEKVTINKYGRVSYVVNGRDVFAEELLPAKGQEKLKMRAC*
Ga0104986_170616	F097199	AGGA	MSEALTRVIDEQQKRIDDLLEGNKKLIERADRVFKQNDELFEAMARLLDYDLPSDNITDKQWADYCSLKHEVRMQMLDAGYCVRCYEFICECENQYD*
Ga0104986_170617	F032955	AGGA	MTKNEAHHLLDQQKQGIAVAQHLVNHALLVCGDIGPSCFDGKNSRVEGASMAQGEGIGGLSNSLMAWDNHRFNQHHEGYKT*
Ga0104986_170622	F012211	AGGAG	MPTDEEQFKYECWAIVQELDPEDIADAIVDSVALVEAIKANHAEDVADIVMKRVELKVRRRAELRVFDVVKTQWIDDVEELQHYRNLRIERVQKALDERKITEAKMDGPFKEMFDE*
Ga0104986_170623	F044970	AGG	MNDFNDYSTMLMAIENKTKELSNKCLSRNYGGFTADIQTIQSQLTLLTMWITQAQCEQVRENTYRILNKV*
Ga0104986_170627	F020138	AGG	MNQQQTTRLNAFWQDVEAHKALNPSSPESALVILKSVALDALLAAQDIEQIGVNDENN*
Ga0104986_170628	F011742	AGGAG	MKTIEFVPFEWDNADFNPEIDRIEVDYQWHEGDDSVGLISYCEKTVKWMRFNLQIKDITDELSYADLAYLKHEIKRNDQEIASERAD*
Ga0104986_170630	F002764	AGG	MKTEEDEAFEELAKRQGDWGLQGSRKHQIIRYAENNARNEVIEEVAQHIEKCTLAFGKDTIQSFTAYVRRMKSGMD*
Ga0104986_170639	F040522	N/A	MANGCVAAIRKGCELYKEVKGTVAAAQKTVKEVTAIAEEVGGFFGFFKKKKPKPTATPVAAKAKKAEAEIWDEGRVVADLAANLSQFFKVQQQLADHIREEEEKSKTVYDPNQNIMEAALNRELAKTQFEKLAKEIREIMVYQSPPELGNLYTRVNQMRVIIIAEQEEARLAQEKKQREAEWQRRRVISAIQDKAIYGVACLVFVLYLVLFFSLLIMDRKVRWGF*