Scaffold Ga0104986_1700

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1700
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 24408
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (27.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020696	Metagenome / Metatranscriptome	222	Y
F020908	Metagenome / Metatranscriptome	221	Y
F042902	Metagenome / Metatranscriptome	157	Y
F097352	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_170019	F020696	N/A	MENKLETCHHCGEQKEDCYHGYISLLIPLPRIEEMIDKWGRKDWWKNLEREDLTEDEMKELDGLATYDQLLNTVGRGVQCDDCAKKESELYEKYYPKNLES*
Ga0104986_170028	F042902	N/A	MTLQELITLAGDRDLSKSYPKADGVYIWDYKLEYDATNNFELQLRLIPSDSGKAGFKDKVSVDELINYVLEETNPELPADQILSEMKVVGAEGITIARI*
Ga0104986_17006	F020908	N/A	MLIKKFIKIKTKVMFKRLFKYTPTQQEQQFIDIVTKLLDHPKTSLRMTPLTNKYFLINEQKHYYVLLQNSGVQLTNTKFSFCKSIHPKAYDKIIETIHSHIEANRQALEERLFKNETTMLDSVLTSL*
Ga0104986_17009	F097352	N/A	MKQFLASTIVNGNEIKLVKENGGYFIHWGEHDKTKAIKELLTPSGRKPSQSSAHKKFLEAAKAAQYLKFSKL*