Scaffold Ga0104986_1675

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1675
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 22316
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (64.52%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F020665	Metagenome / Metatranscriptome	222	Y
F022371	Metagenome / Metatranscriptome	214	Y
F033721	Metagenome / Metatranscriptome	176	Y
F037193	Metagenome / Metatranscriptome	168	Y
F039993	Metagenome / Metatranscriptome	162	Y
F065527	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_167511	F065527	N/A	MLDGFRFVLETFYMKAITMITLTAILMASVMAEDEDEIGIGDFAGGVLGKSAIITGRNTAVTSDGKFIYSNGRGFATSGGYYGANGKQVFGNGKLVVKSGSFFYGSSSSWKNGNSYFDGTKGSWITWKPKISD*
Ga0104986_167517	F033721	GAGG	MRWIKKEFDDDGKPEWAVYIDETGEGREEDWSHFDTYKTRDEAIEGCRNITWEDYDCSDK
Ga0104986_167518	F039993	N/A	MKFVLSWILYHIGDIISLTLMRWGYGYGFYNKVMLLSSDLDEHGKIWKDVK*
Ga0104986_167519	F003304	AGGA	MKQALVTQSFGDDWKKIIDLTRPRMEAYCKRHSVDFILIDKPLTHPAQYSKSAIGNIMATKGYEQVAFVDADVLIANDCPNLGEDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLSNQIRADEAKLVELGR*
Ga0104986_16752	F000635	AGAAG	MTLTEIAQYAGEKVGKTDADTLTFLQKSASLAYRRVWDFAPWRETVTNSTYSVGTNRTITLGTNVETPLSVAYNDTEVDPIDLATIVSQDPGLLDDARTGDPDTYHFTGRNSSGVAQLNLYPRLATSGTIPLRVVEKLKCITRSNYVVDFPPSTDALGDELRLPHVHHLVLALTHADALERERQYTKAQVITQGANSDLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA*
Ga0104986_167521	F022371	AGGA	MFCLLDLAGVVWAIGWFVLYSSITLSAIYCALYIILKLIDYIRKELDL*
Ga0104986_167522	F020665	AGGA	MKKKRNKITLVKTTEEKAVRVMIDIDDDLYEALAKAGRHHLAKDKMACFEYALNKALLELCEELK*
Ga0104986_167526	F002826	N/A	MQVEAKDRLKWAREILSIARNKLVVERDRATHGHAIDMIQIITMVDAASLVCKEVVEDE*
Ga0104986_167527	F037193	GGAGG	MKTKDEIAMQVKKEWDESGNRWRLSVSAGGFTTEIFCYGTAEEEYFKCVKELVDHAYQMQSV*
Ga0104986_16754	F002149	GAGG	MTAVEYIEESGVPEAMWPNLADWFGWFEKQGMVGIVRDEDGIAGVALARCVKDGQKPDHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWQRFGPRKRITFNRSGKPRSYDYMTFMRKARV*