Scaffold Ga0104986_1671

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0104986_1671

Scaffold Ga0104986_1671

Overview

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1671 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	22014
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (72.97%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070105	Metagenome	123	Y
F072332	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_167115	F072332	GAGG	MITLQDYFSDKPHPNEYNLNALTLLYRANNLLAAYTTDTGKMPEINPITGSQVSGSKGGDGGFRLPTSLTGSSKSAHKTAQAVDIYDKGDHLDLWLDAKPDALIKYDLYREEPASTKSWCHLSTRKPLSGKRTFKP*
Ga0104986_167118	F070105	AGG	MTIKAKAKKVVSKVDEVIVKTDSTVDHALDIIKSSKRSIIIIILIVGLIIWMV*

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