Scaffold Ga0104986_1656

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1656
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 21263
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057200	Metagenome	136	Y
F070990	Metagenome / Metatranscriptome	122	N
F090370	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_165610	F070990	GAGG	MKLIWDAPQDLKTDRKFEEIILPKGVYTFKITKAEFAPDQYKKSEFNKDGMSLKLWLDTEFQGNNKRIFATIGVDKPWEINTVVIACNLPAVKKGGSLNEQSLVDVEIMASIEQYTSKVGKVSNIVKAYLPAHPAAVTKHADPVPAADMDIPF*
Ga0104986_165620	F057200	GGAG	MAPVKQQKNLTPLQTTVLVGQLISILIALGLYVSSLGEKNAVLTRIAEDTKSLTVTASELTKAVIRGQAIDEKHTEAIAALALRIDKLITK*
Ga0104986_16566	F090370	N/A	MTHADSILRIATRVAALGSERDAQRLREVVVWIVEWEVKVREFESVEARLRQCEAERDHIREIDCGLRPRTNTNQEPKGKWVK*