Scaffold Ga0104986_1633

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1633
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20423
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (48.78%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012017	Metagenome / Metatranscriptome	284	N
F020891	Metagenome	221	N
F022191	Metagenome	215	N
F022193	Metagenome	215	N
F023838	Metagenome	208	N
F028156	Metagenome	192	N
F034162	Metagenome	175	Y
F042314	Metagenome	158	N
F042315	Metagenome	158	N
F050991	Metagenome / Metatranscriptome	144	N
F057334	Metagenome / Metatranscriptome	136	N
F084179	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_16331	F050991	N/A	MKKRRDPNLTSAEKFGRLRQAMFRLIGNDAFQDFVEELREMQHSTMIDLCADAVVKDERMTLAATGELRAYSQIIGLYDDFVQQQ
Ga0104986_163310	F022191	GGA	MPEGIKTDGSHGRTTYSPQKLVNDLAVATLEGRGLGLKKHPRLGYVTEEDKRLFQRIVGITVEEFNQRLIGKLDNLADRIVDRMLDTVEDTPLNSLGFNLAVAIDKRQRLAGLNATQGANVNIQVNNYGSLSKEEIVARLSGKAPVPTIQAAPVELPNPNDIDVKKPSIASTAG*
Ga0104986_163311	F084179	AGTAG	MWPEGGEGIVGKLCRNKQYNELRVMGEDGRELWTKVGNWQFTGGLVRGERVLVNRIWLSGDDTDAEYEVVRRIDVNEDVPQVPTVVDPIGVESAPIEDVVAHKSAIPEQRTLEASLDEQLRPVAILPQFQREEPDYPRKQESAEDYISRIRAEAAMWANGQGR*
Ga0104986_163323	F042315	GGA	VKKQKRYPRNWALEHKPSNKWQQVLVARKDKNDRDVKRKAKSLPDLSPTELYEVIDEGYHYFWQRRGRIPPNYNAIRWAKA*
Ga0104986_163328	F034162	N/A	MRWVDATFRLPVAANMPVHVMLADGKEERRDTVTGDWRQVVRWRTILDADPKSKKKKG*
Ga0104986_163331	F022193	N/A	MTHTDTLDQHVREYYLYHDEQTKFFDDLASANKPVDAGLDEAAALNWCEQMHELTGTWNADVWAEKGWW*
Ga0104986_163333	F028156	AGGAG	MVADKNSIHVSGDELLARAKLCAKLLEVVDEITAASGLISEGRYWDAYRITNKIELMAAEVSSDLHGIDLAAGDQS*
Ga0104986_163339	F042314	N/A	MTHTTGQELKDAGCAQVLEHTPEAWVADFEQQAAALLKTNGSFTAEEVVTLIGQPPNHSNAIGAACRQFVKRNGLTGSYEPARSPSAHGRIITRWSMTTF*
Ga0104986_16334	F057334	N/A	MCVMVTKRAVDEWLIEPDVEGAREYARLSIYAEPEGLNIDGQGMIPWAQIESSRLTYTVHMKKRHAAR*
Ga0104986_163340	F023838	N/A	VTPAHGTTIDLDRLIRCLEAREGARWASPGGALQFTRATWSEFSTDPYLRASQPDKARQIARKALFLTLQRMERDGIRPTVWLLALRWNCGYEGMKRRMGEPWSYAAHVHNLYYDNDFR*
Ga0104986_163341	F020891	N/A	MTFAEHAFAACAHKAKEVGRRLNKDEWLATMQAAYDSYPHGGLLVSDSPKPKKVLPKASDEDWLKELEANPAYAGIDIRRELGKAQAWASVRGVGVSQRRFVNWLNKAMTDRPLGLAAGQTSFNRPQAPKAEEPAGWRE
Ga0104986_16335	F012017	N/A	MAQKRILIGTPLKGDIPKSYFRTSLQMATAEIPDVKLDWILLDGPAVQIARNEIAHYAVEQKFDELIFWDKDVLAMRNGEDMTAAALMRLIGHDRDIVTAVYSSRSLETHWHVHPIKGEEPDESGLQRVERASIGFCKIKVPVFKKIAWSNIDRAAMLVDPNKAPKLVPELFPMELRGRNTPLYRLQQIWAALSEVKNDEALRARIERELTIRYDEPNSYISEDFGFCDLARAAGYDIWMDTLMVLGHQASVVVPIESGKLLEMLSEPWRKEELAIIKQQMLEAQAAKKK*