Scaffold Ga0104986_1632

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1632
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20415
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (65.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017999	Metagenome	237	N
F018168	Metagenome	236	Y
F024539	Metagenome	205	N
F027846	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_163214	F018168	AGGA	MKLSVKQKAIVKSYLRSIAAATVTTVLALVADIRPELSILAGALVAPLARYFDPTDKNFGLNS*
Ga0104986_163220	F024539	AGGCGG	VAELKSDRSLKAVYVQGFDELMQKIEDINPDTKKLFKKELRKQIKPVEKLAKSFIPSEVFPGWRDTKPYYPPTWGWAFDQSHRGRTYGKTNESRWQWSQADAVAGIQITSAKVKVQRGRGTDFEVTALALVNKSVPGIIFELTGGGTARSRGKTRRVSRNPNASEGFIRKVSQAHGAIAGDGKGKRVIYKATAEKGEQALNGIRAVIDKYLAQTFRGN*
Ga0104986_16323	F017999	N/A	MSFDYPKAMAEGHQYNKFIGELLRSYGVPNVDVPEFSIATTHDKIADKTKNEKDIVVDQLVLEVKSIAQTFTNADDFPYALVIVDTVYGFDQKIIKPFAYIYVSQVTKETFVIPVSTRQYWTIATIFDHKRQIEVECYFVTKRHCRPLLELIDILLERAHERAGEMQ*
Ga0104986_16326	F027846	N/A	MVIVKYDKVSGAYVDSKRTHFVKASLIRAYAHKSMGASQVRGRLSAAMVEGYWLDKFKEAVKYEL*