Scaffold Ga0104986_1629

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1629
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20264
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (23.68%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006181	Metagenome / Metatranscriptome	379	Y
F012446	Metagenome / Metatranscriptome	280	N
F015582	Metagenome / Metatranscriptome	253	Y
F016966	Metagenome / Metatranscriptome	243	Y
F029411	Metagenome / Metatranscriptome	188	Y
F038202	Metagenome / Metatranscriptome	166	N
F040100	Metagenome / Metatranscriptome	162	N
F040616	Metagenome / Metatranscriptome	161	N
F041760	Metagenome / Metatranscriptome	159	Y
F046321	Metagenome / Metatranscriptome	151	N
F082581	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_162910	F012446	N/A	MKDIPEKFVKNCDLVGNNTFIQIKKEGNVYMYRRERMDGTIKSYEVFLGKFIAKGTPLPGGVVEKEDRIQYPGSAQFGKTAYDCKTEAQAEQRFEELLKKSANQAEAKEEAAKTGVRNRGRRGASKKIKLDMTLNKGTKFTAKFLMTVLGVTQPVLFPIIKQWEKDGVIKANGTVKAEGKGRPSTEYIVV*
Ga0104986_162912	F015582	N/A	MSDINPELVAEQAEDAKYLQELNHYVNTLSAPSAEAVALYRSKLSMLEDIHNEIRSKYPEFMPEYDPSMDAELNQSLGKYQEHTYSLSSRDMRSE*
Ga0104986_162918	F046321	N/A	MTNPIYKLIGYVIGVLVGNGIIMWVYNSILPEMYGFKPIGYWQLFGLYLICGYLFKTHNVNILNKDK*
Ga0104986_162919	F038202	N/A	MKIKVTDIVYDTDIDDDSTTFVLNSDLPSEMIVEVDGIIDIESEIADAISDTTGWCVSGYNYEVL*
Ga0104986_16292	F029411	AGGA	MNADFNTIDPQNELSDLYTPDYREEALNEDRYLEMAYEDRFEMPCMEDYQ*
Ga0104986_162925	F041760	N/A	MTKVLAVKYPSSVDRVRQSFDHLRQVFDVPDVSTIKDMFGSLLFNDNQTFRYNYCLVKYNNELFIIEPVDLSKCTYVRKKIEFHPLQHMV*
Ga0104986_162927	F040100	N/A	MNTDLTVLFKTITESVPNYIMFIILIVLGYSLCVAFVKTLSDNVVKVVLAARAPVEFKIRDGSDTEK*
Ga0104986_162930	F016966	N/A	MNKVTFKRVVNQSLPNLYSGTINGEIVGFIYKPNDSKSDRNAWRSYVGVGDNAKFLYHTWDMNDAMEAVQLAVK*
Ga0104986_16295	F040616	N/A	MDPEDIAYEDSVSSDTAGWPGDGSGEDDFQDYNQNEASDYYNE*
Ga0104986_16298	F006181	N/A	MKKNLIHVIYPDEATYSYVATNDMSVEDNLERVFAEWNHGSGMECEMFIKSNKRSLSVNDIVCVNGKYFQCQSFGWKKVTMEYVNELEKEVSLHPTRYAYGTWYALTEIMYGRRHDDNEALLEGVETV*
Ga0104986_16299	F082581	N/A	MNSTSTKTSKVGRPAKALKLILNKSFTIKDLQTLNPDIKFVTIRAAVLRGLSNGKYTKLPRNVQTGKKGKPANIFINTKVYKANLANLAKTKAVATVTAEVVTEPVVA*