Scaffold Ga0104986_1626

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1626
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20184
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023105	Metagenome / Metatranscriptome	211	Y
F035303	Metagenome	172	N
F039137	Metagenome	164	Y
F045092	Metagenome	153	N
F047057	Metagenome	150	Y
F068579	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_162612	F023105	GGA	MSVDSLIAQFGRSLEIYTRAESVDAGGAYTRVYTASGVLITVYLQPATPNESMLNGSIRSSTSVTAYVNAVDGSSLATGSRLFDNDTSIMYEITGFRRPDMRSGPDSMAYYILALTAVEGES*
Ga0104986_162614	F035303	AGGCGG	MSQVILTTIYNKLVAVQTAGTVYNLVGGKIYQLEGPQGDAMPLLVYAISNEDTTTFMSSATQSMHTLDCAFTFYFKPDSSVVTAMAAEAALFLLLHKASMTPSDASYSTIESICTSRGVPTINVDSIVIDTTYRIFATKQS*
Ga0104986_162617	F068579	GGA	MLSCLSANDYIEIGERRWHALHNRAQEMLEDSRADSAQRVECMKAIYDLRDRTTQLAIQHGATLEGALEVIEHACKKAKVDGGEAIALMQPEVVVSTALALFGIDLDAESSSPK*
Ga0104986_162620	F039137	AGG	MSDVYELNTSRKYLNNEGKPRAERQFVVVGAATEGDVVALLGTTLPGEYENYPNDGALPYDMLAFDYSITKDPSAVSTWQVTMRYRAEIGAAQAFNNPTSPQLSPTEVGYRTARLSMQAEFRDLWRDFASVAALQAVASGNYSVTDIGGSSIDAGGIPLSTLVYKQEFSILITDSLLPDAQAIATQIGTRNASTFLNYPSGSVVFAGCNCETIPEVGRNSIEYRFIYDQAYHQIQYPVKGNNGSPILAAATAGTILKGSAEQVFYKQPFKYTSNFNNLSQYFTGL*
Ga0104986_162621	F045092	AGGA	MADEINISLNVDVSSGNFRASFRPGTIQPDMATIIGSDLSQTIGTTIENLNIGSDVVAGGYYWFRNLSTSTSTTFDPSIKISSCAATAAGTSFPFLNLRPGEYALGRCVTTSFSAISSTATANLQFGIMSL*
Ga0104986_162622	F047057	GGA	VKLPRFTSGSIGRLDYKALNEAFIAIEKMDGKAQDGGSYQGAHRESFIATITGLMTDSLQGAYQTTGQGTLFKTYVYDWNEVDISYGLDGSNSGVGVSDLQGARGIDYTDGVTITAPASYYPAIDFAPYRRFAAGDVVMLTRCAVKSGSTYSMMYTITPVSAVTPFLARLTSVVGGTESGRYAWTGLSRIIEGTVALKTVATNLYEKNRICTPGAATAQSVNGASWDGSNSWGHGQDATGVTKLDLPVGVAGTGTIVVMHQGHILESTDGTTFWFYCISPITCA*