Basic Information | |
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Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1626 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 20184 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (70.83%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F023105 | Metagenome / Metatranscriptome | 211 | Y |
F035303 | Metagenome | 172 | N |
F039137 | Metagenome | 164 | Y |
F045092 | Metagenome | 153 | N |
F047057 | Metagenome | 150 | Y |
F068579 | Metagenome / Metatranscriptome | 124 | N |
Protein ID | Family | RBS | Sequence |
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Ga0104986_162612 | F023105 | GGA | MSVDSLIAQFGRSLEIYTRAESVDAGGAYTRVYTASGVLITVYLQPATPNESMLNGSIRSSTSVTAYVNAVDGSSLATGSRLFDNDTSIMYEITGFRRPDMRSGPDSMAYYILALTAVEGES* |
Ga0104986_162614 | F035303 | AGGCGG | MSQVILTTIYNKLVAVQTAGTVYNLVGGKIYQLEGPQGDAMPLLVYAISNEDTTTFMSSATQSMHTLDCAFTFYFKPDSSVVTAMAAEAALFLLLHKASMTPSDASYSTIESICTSRGVPTINVDSIVIDTTYRIFATKQS* |
Ga0104986_162617 | F068579 | GGA | MLSCLSANDYIEIGERRWHALHNRAQEMLEDSRADSAQRVECMKAIYDLRDRTTQLAIQHGATLEGALEVIEHACKKAKVDGGEAIALMQPEVVVSTALALFGIDLDAESSSPK* |
Ga0104986_162620 | F039137 | AGG | MSDVYELNTSRKYLNNEGKPRAERQFVVVGAATEGDVVALLGTTLPGEYENYPNDGALPYDMLAFDYSITKDPSAVSTWQVTMRYRAEIGAAQAFNNPTSPQLSPTEVGYRTARLSMQAEFRDLWRDFASVAALQAVASGNYSVTDIGGSSIDAGGIPLSTLVYKQEFSILITDSLLPDAQAIATQIGTRNASTFLNYPSGSVVFAGCNCETIPEVGRNSIEYRFIYDQAYHQIQYPVKGNNGSPILAAATAGTILKGSAEQVFYKQPFKYTSNFNNLSQYFTGL* |
Ga0104986_162621 | F045092 | AGGA | MADEINISLNVDVSSGNFRASFRPGTIQPDMATIIGSDLSQTIGTTIENLNIGSDVVAGGYYWFRNLSTSTSTTFDPSIKISSCAATAAGTSFPFLNLRPGEYALGRCVTTSFSAISSTATANLQFGIMSL* |
Ga0104986_162622 | F047057 | GGA | VKLPRFTSGSIGRLDYKALNEAFIAIEKMDGKAQDGGSYQGAHRESFIATITGLMTDSLQGAYQTTGQGTLFKTYVYDWNEVDISYGLDGSNSGVGVSDLQGARGIDYTDGVTITAPASYYPAIDFAPYRRFAAGDVVMLTRCAVKSGSTYSMMYTITPVSAVTPFLARLTSVVGGTESGRYAWTGLSRIIEGTVALKTVATNLYEKNRICTPGAATAQSVNGASWDGSNSWGHGQDATGVTKLDLPVGVAGTGTIVVMHQGHILESTDGTTFWFYCISPITCA* |
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