Scaffold Ga0104986_1621

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1621
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19886
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (69.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011646	Metagenome / Metatranscriptome	288	Y
F018703	Metagenome	233	Y
F029021	Metagenome	189	Y
F045061	Metagenome / Metatranscriptome	153	Y
F053128	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_162110	F029021	AGAAGG	MNICQFCGWEIARVDWYHRYNSKLICDNCVMDTMNEREREESK*
Ga0104986_162112	F011646	AGAAGG	MSNVLELRNGAVKRIIFYEVADPQNIAVWGGESALEALKWYRNSPTGSRIYVQEWLTDEEDAKQVSSQIEITPIVLSTIANCMERWS*
Ga0104986_162113	F018703	GGA	MELMNRVKKRVETAKAQAVRQRNYRRARDRALARLSRDYPNAYRTYLEEEMSTDEQMGKRWLDITGRTRIVKHRS*
Ga0104986_162135	F045061	N/A	MATTSKEINLTQLDKELGGQGLCANFNDPKKKLIVPADNSTVTEDELKDAIAAHIAGPTEEEIKVLNRNQGLAKLKELGFTDDQITALLS*
Ga0104986_16218	F053128	GGAG	MKGYFVIDNQGTGWKEGYLWKSIKEIADSIRDYDDYRELEISNLTHSQVCELWDFEYHRITPANCEKYGVNPSELTREIKI*