Scaffold Ga0104986_1618

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1618
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19724
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (45.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009136	Metagenome / Metatranscriptome	322	Y
F012453	Metagenome / Metatranscriptome	280	N
F082384	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_161811	F082384	AGGAG	MADTAKYKSLSVAIADWKELGVMAEKTSRTRSKMLNKLIKFYKQNRGERTNGHGKQIS*
Ga0104986_161823	F009136	N/A	MTAVGKKLKALGFKKIPGTEPGFHMYELTPAKLQAFDENFKPQIDKRTSSQARKRTSKLDK*
Ga0104986_161826	F012453	N/A	MKIEQGTQFVVSYIPEKINGQENKKTEVVRRTAVFDEKSRVFTTTKGETALVYFDVERNGYRTAKNFIITLRG*