Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1600 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1600 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	18834
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

18834

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001531	Metagenome / Metatranscriptome	676	Y
F001599	Metagenome / Metatranscriptome	665	Y
F008808	Metagenome	327	Y
F009064	Metagenome / Metatranscriptome	323	Y
F011647	Metagenome / Metatranscriptome	288	Y
F018684	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_16001	F001531	GGA	MDWDNIERWDYIVTAVASEYHRKFSMVELEDIRQSLYQWFAEHPNKLKDWEAIGDKDAKNLIYRSLRNQALDYCQRWKAKSVGYDIGDIHYYDSEIVEALLPPVLRGEYGVTHKLNLGFTGRPSAPAEGGNLTIMMLEIDSGYWKLSKDDRRIIFLRFAENLDFGEIANYLELGTDSAARMRLKRAITRLINKIGGYKPYRDVDTTSEEPEEEHQPPVE*
Ga0104986_160029	F001599	AGG	MSKKDSIALVWCDNGMVDGKFMQGVADVMLKSGVEFGSTLRSQGNQIARQRQTVIDYWYDKTDYEWLLWVDSDVVISPEKFKLLWDNRDAEKRPLVTGVYFTTDNPEEPLMVPMPTVYSFVNDGDGGVGITRVHPLPENQLIKVDAAGMGFILMHRSIVPKVREAGPDGQVFMEIGRGTKFMGEDIFFFALCDKAEIPVYCHTGATVPHMKRFSLDEHYYKAFFGKPKEEPKSKLITPDKKIITPR*
Ga0104986_160033	F011647	GAGG	MSSGQRKRHDGWNKSIMRDGLIVILRKDGSEKVRLDPKTKEVVKGR*
Ga0104986_16004	F008808	AGAAGG	MDRSIPPCPECGQRFNNVFEATDHLLEDDDDEFDPALILPNGARLMIGSLLRCLYKYADKPDQIKTITQSTYMTLFTAETQPAAMKDIVEEMIIESQMMDIDNEIEYFLGRNSNE*
Ga0104986_16007	F009064	GAG	MIVQLNKDEVRVCTMLAVERWLTKFGSTDQPNYAQGKADGKLEPEINANIRANVCEWAVAKHYNMSWNVPCYPNALHKKRHSLPDVGENIEVRSVRTQDSIPFWAKDKGKVIIGTKCLDTEYYSEIEIFGVAYPEEFMKPEYYDSYINGWRIPISGFTHE*
Ga0104986_16009	F018684	N/A	MRNIMANEDWKLQVSYKTPSGDMINVRANTADELSVLLEGVGDYSPQIAATQQKIVGSYALNPSLTSSSTTSTKPSTYSAPTPVSQASGTAAPVCKHGARIWREGISKASGKPYAFWACPSPQGTPDQCKPVN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1600

Overview

Ecosystem & Geography

Associated Families

Sequences