Scaffold Ga0104986_1598

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1598
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 18802
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (40.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011285	Metagenome	292	Y
F018912	Metagenome	232	Y
F073084	Metagenome	120	N
F102547	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_159811	F018912	N/A	MTKKIITDEMIADYHKAVIKFNEDIKKERKYRQTLCENFIADWADIIEEIGIRNRKELNNEK*
Ga0104986_159816	F073084	N/A	MEKKDKIINWICNDYITNIKEKDWPKESWYYVIEKAFDLYNMTLPELKKFKIELTKK*
Ga0104986_159818	F102547	AGGA	MKAQFNIIYVPEKINGVENVEKKSVCRSGLLDDKTKIFTTTKGEIAFCYFDVDRNNYRTAKNKWTINIRG*
Ga0104986_159829	F011285	N/A	MKYLFVFLILIGCSKDISFDPTTTIVKQTIKFLYDESSKEKPVMEIQY*