Scaffold Ga0104986_1594

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1594
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 18700
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (51.72%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F009142	Metagenome	322	Y
F019290	Metagenome	230	Y
F035669	Metagenome	171	Y
F041645	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_159414	F009142	N/A	MTNSVQINVEDALDNLLANIPNLNVYKTNRVGAKLFPFATISASVGGQILGNYTGVYEVDVTINYSDTATKISQEDFDAEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTDKRAWQRGLNMSLICTPSETDDGLRYLNFYQKQNSMYVAVI*
Ga0104986_159416	F005584	N/A	MITDLWQSVTGLGSSAVSASVTDLAVSSELDVGGDVFRITQNAVVCASMISAPVIGNLCTVSGIERMIAGFSQSTDGLSYTIDLAEITT*
Ga0104986_15942	F035669	GGA	MREGKLNELRGNSRLALGFFNSIIRRIECTKPLAGAGIAISEKENGYEISSIGGVVSSGGSISGYSEITLNVCRNGNPDTIIVLGIE*
Ga0104986_159421	F003049	GGA	MKNAKQIIGCRKSKKGENTKGLGIIKFGKSRIDKTRYVIVDITCDDKAGKELYEAGMIALRYDPEAVIEYAIKKALAEMVKCKK*
Ga0104986_15943	F041645	GGAG	MSEAIIGSPISGQKVLRRQNYQKDLVGLETIIEVYIIRTADRVTLAPARDTIHSSFSTATPKYSRMAVETISFDETDGGLTTMSVVYVGLTTSTGLPPPIIRLIPTAGEGVYGPPLVIEAEYVTDVSETEFMAGQLSQNNGLQQAPLFTTTIKMPEVINGTTMPKDPRPAFFQEGVGLLTQYGGYCFLSMSCERRGLFLVARNTFHEVQQLATISRGTLQ*
Ga0104986_15947	F019290	N/A	MEGHTYWGTTNLKVASAVAAFGAKPRPVDPVTRVIKDGHQQVTFWFISDGNGDIAKKEMERTWADMQSDQESPIRYVRAALENRETLLGLVKRAEPIRIIQIGGQTLMVPENASPERKKALLRHI*
Ga0104986_15948	F006138	AGGAG	MPATTIGQAGLVFGATAEGLGLVQSFSETRNVEKSEIRDRTGDIVGVAYYNATTGYSLSVAVTGTYGVTAGAALAALANATTLGTTRIDSITINKSNDAFVTLDISATGYPNVS*